MirGeneDB 3.0
MirGeneDB ID

Llo-Mir-2-o114-v2

Family name MIR-2 (all species)
Seed AUCACAG
Species Bootlace worm (Lineus longissimus)
MiRBase ID
Paralogues Llo-Mir-2-P12  Llo-Mir-2-o114-v1  Llo-Mir-2-o115  Llo-Mir-2-o116  Llo-Mir-2-o117  Llo-Mir-2-o118  Llo-Mir-2-o119  Llo-Mir-2-o120  Llo-Mir-2-o121 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Lineidae
Node of Origin (family) Protostomia
Genome context
(GCA_910592395.2_tnLinLong1)		 OU343002.1: 11598647-11598703 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUGUCUGUCGAAGUAGCUUGUCCCUUGCUGUCAAUGCUGGACGUAGUAGACAUUCUAAUACCUAUCACAGCCAGCUUUGAUGAGCCAGGUGCAAGUCUGUUGCUGAAAAACAAGU
Get precursor sequence
Structure
        10          20        30         40        50       
CCUUGUCUGUCGAAGUA--     UC   U   -|    U     AC  A    ACAUU 
                   GCUUG  CCU GCU GUCAA GCUGG  GU GUAG     C
                   UGAAC  GGA CGA UAGUU CGACC  CA UAUC     U
UGAACAAAAAGUCGUUGUC     GU   C   G^    U     GA  C    CAUAA 
     110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr
Star sequence

Llo-Mir-2-o114-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGUCAAUGCUGGACGUAGUAGA -22
Get sequence
Mature sequence

Llo-Mir-2-o114-v2_3p
mirBase accessionNone
Sequence 
34- UAUCACAGCCAGCUUUGAUGAGC -57
Get sequence