| MirGeneDB ID | Llo-Mir-2-o120 |
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| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
Bootlace worm (Lineus longissimus) |
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| MiRBase ID |
|
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| Paralogues |
Llo-Mir-2-P12
Llo-Mir-2-o114-v1
Llo-Mir-2-o114-v2
Llo-Mir-2-o115
Llo-Mir-2-o116
Llo-Mir-2-o117
Llo-Mir-2-o118
Llo-Mir-2-o119
Llo-Mir-2-o121
|
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| Orthologues |
Gsp-Mir-2
Ple-Mir-2
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| Node of Origin (locus) |
Lineidae
|
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| Node of Origin (family) |
Protostomia
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Genome context
(GCA_910592395.2_tnLinLong1) |
OU343000.1: 4140870-4140930 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCGAUCUCGGUGUUCUUGCCAAUUUUACGCUCCACAAAGUGGCUUUGAAAUGCUGACAUCAAUGGUUUAUCACAGCCUGCUUUGAUGGGCUGCAAAAUUGGCCGGUCGAUUAACCCCUUCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GCGAUCUCGGUGUUCUU-- A - U - -| U AAUGCUGACA
GCCAAUUUU C GC CCA CAAAGU GGCU UGA \
CGGUUAAAA G CG GGU GUUUCG CCGA ACU U
CCUUCCCCAAUUAGCUGGC C U - A U^ C AUUUGGUAAC
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Llo-Mir-2-o120_5p* |
| mirBase accession | None |
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| Sequence |
0- UCCACAAAGUGGCUUUGAAAUG -22
Get sequence
|
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| Mature sequence |
Llo-Mir-2-o120_3p |
| mirBase accession | None |
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| Sequence |
37- UAUCACAGCCUGCUUUGAUGGGCU -61
Get sequence
|
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