MirGeneDB 3.0
MirGeneDB ID

Llo-Mir-2-o119

Family name MIR-2 (all species)
Seed AUCACAG
Species Bootlace worm (Lineus longissimus)
MiRBase ID
Paralogues Llo-Mir-2-P12  Llo-Mir-2-o114-v1  Llo-Mir-2-o114-v2  Llo-Mir-2-o115  Llo-Mir-2-o116  Llo-Mir-2-o117  Llo-Mir-2-o118  Llo-Mir-2-o120  Llo-Mir-2-o121 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) Lineidae
Node of Origin (family) Protostomia
Genome context
(GCA_910592395.2_tnLinLong1)		 OU343000.1: 4142150-4142210 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGAUCAUUGAUUAUUUUUUGGCCCCUCGUUCCACAAAGUGGUUAUGAUGUGCUGUCAGUUGUGACAUAUCACAGCCUGCUUUGAUGGGCUGAGUGGCUUUGACAAGAAGAAGACACGGAU
Get precursor sequence
Structure
        10        20          30         40         50         
UGGAUCAUUGAUUAUUUUUU--    C    UU   -      -|   A       CUGUCA 
                      GGCC CUCG  CCA CAAAGU GGUU UGAUGUG      \
                      UCGG GAGU  GGU GUUUCG CCGA ACUAUAC      G
UAGGCACAGAAGAAGAACAGUU    U    CG   A      U^   C       AGUGUU 
 .       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
No No No No No No
Star sequence

Llo-Mir-2-o119_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCCACAAAGUGGUUAUGAUGUG -22
Get sequence
Mature sequence

Llo-Mir-2-o119_3p
mirBase accessionNone
Sequence 
37- UAUCACAGCCUGCUUUGAUGGGCU -61
Get sequence