Mir-2-P12e

MirGeneDB ID

Lgi-Mir-2-P12e

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Owl limpet (Lottia gigantea)

MiRBase ID

Paralogues

Lgi-Mir-2-o50 Lgi-Mir-2-P12a Lgi-Mir-2-P12b Lgi-Mir-2-P12c Lgi-Mir-2-P12d

Orthologues

Agr-Mir-2-P12e Cte-Mir-2-P12 Dgr-Mir-2-P12 Esc-Mir-2-P12 Gsp-Mir-2 Hru-Mir-2-P12 Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Npo-Mir-2-P12 Obi-Mir-2-P12 Ofu-Mir-2-P12 Ovu-Mir-2-P12 Pau-Mir-2-P12 Pdu-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 Rph-Mir-2-P12 War-Mir-2-P12

Node of Origin (locus)

L. gigantea

Node of Origin (family)

Protostomia

Genome context
(Lotgi1)

LOTGIsca_2: 4514299-4514357 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P12e)

Mir-71 LOTGIsca_2: 4515804-4515862 [-] Ensembl
Mir-2-P12a LOTGIsca_2: 4520083-4520141 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

CGAAGGUGUGAAAAUAUUUGUGUAACUGUUCCGUCUAAGUGGUUGUGAUUAGUUUUGUUAUUUCUUAUCACAGCCUGCUUAGAUCGGCAUUGUGCACAAAAUAUCAACAAUGUUAUGCC

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Structure

        10           20        30         40         50        
CGAAGGUGUGAAAAUAU---       ACU  U   -       -|        U  UUUUG 
                    UUGUGUA   GU CCG UCUAAGU GGUUGUGAU AG     \
                    AACACGU   UA GGC AGAUUCG CCGACACUA UC     U
CCGUAUUGUAACAACUAUAA       GU-  C   U       U^        U  UUUAU 
       110       100         90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Lgi-Mir-2-P12e_5p* (predicted)

mirBase accession

None

Sequence

0- CCGUCUAAGUGGUUGUGAUUAG -22

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Mature sequence

Lgi-Mir-2-P12e_3p

mirBase accession

None

Sequence

35- UAUCACAGCCUGCUUAGAUCGGCA -59

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