MirGeneDB ID | Npo-Mir-2-P12 |
---|---|
Family name | MIR-2 (all species) |
Seed | AUCACAG |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | Npo-Mir-2-o45 Npo-Mir-2-o47 Npo-Mir-2-o48a Npo-Mir-2-o48b Npo-Mir-2-o49 |
Orthologues | Agr-Mir-2-P12a Agr-Mir-2-P12b Agr-Mir-2-P12c Agr-Mir-2-P12d Agr-Mir-2-P12e Agr-Mir-2-P12f1 Agr-Mir-2-P12f2 Cte-Mir-2-P12 Dgr-Mir-2-P12 Efe-Mir-2-P12f Efe-Mir-2-P12g Esc-Mir-2-P12 Gsp-Mir-2 Hru-Mir-2-P12 Lgi-Mir-2-P12a Lgi-Mir-2-P12b Lgi-Mir-2-P12c Lgi-Mir-2-P12d Lgi-Mir-2-P12e Lhy-Mir-2-P12 Llo-Mir-2-P12 Mgi-Mir-2-P12 Mom-Mir-2-P12f Mom-Mir-2-P12g Mom-Mir-2-P12h Mom-Mir-2-P12i Mom-Mir-2-P12j Mom-Mir-2-P12k Obi-Mir-2-P12 Ofu-Mir-2-P12 Ovu-Mir-2-P12 Pau-Mir-2-P12 Pdu-Mir-2-P12 Ple-Mir-2 Pve-Mir-2-P12 Rph-Mir-2-P12 War-Mir-2-P12 |
Node of Origin (locus) | Lophotrochozoa |
Node of Origin (family) | Protostomia |
Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 409697-409758 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | GGGGUGGGGGGUUGACAAGGCUGUGCGGUGCUGACCAGGUGGUUGUGAUGUGCUGAGAUCAAUGUUCAUAUCACAGCCUGCUUGGAUCAGUACAGCGCUGGCUGCUGCUGCUGCUGGGUCAAGet precursor sequence |
Structure | 10 20 30 40 50 GGGGUGGGGGGUUGACAA- - G - -| CUGAGA GGCU GUGC GUGCUGA CCAGGU GGUUGUGAUGUG U UCGG CGCG CAUGACU GGUUCG CCGACACUAUAC C AACUGGGUCGUCGUCGUCG U A A U^ UUGUAA 120 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Npo-Mir-2-P12_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CUGACCAGGUGGUUGUGAUGUG -22
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|
Mature sequence | Npo-Mir-2-P12_3p (predicted) |
mirBase accession | None |
Sequence |
38- UAUCACAGCCUGCUUGGAUCAGUA -62
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|