MirGeneDB 3.0

MirGeneDB ID

Npo-Mir-2-P12

Family name MIR-2 (all species)
Seed AUCACAG
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues Npo-Mir-2-o45  Npo-Mir-2-o47  Npo-Mir-2-o48a  Npo-Mir-2-o48b  Npo-Mir-2-o49 
Orthologues Agr-Mir-2-P12a  Agr-Mir-2-P12b  Agr-Mir-2-P12c  Agr-Mir-2-P12d  Agr-Mir-2-P12e  Agr-Mir-2-P12f1  Agr-Mir-2-P12f2  Cte-Mir-2-P12  Dgr-Mir-2-P12  Efe-Mir-2-P12f  Efe-Mir-2-P12g  Esc-Mir-2-P12  Gsp-Mir-2  Hru-Mir-2-P12  Lgi-Mir-2-P12a  Lgi-Mir-2-P12b  Lgi-Mir-2-P12c  Lgi-Mir-2-P12d  Lgi-Mir-2-P12e  Lhy-Mir-2-P12  Llo-Mir-2-P12  Mgi-Mir-2-P12  Mom-Mir-2-P12f  Mom-Mir-2-P12g  Mom-Mir-2-P12h  Mom-Mir-2-P12i  Mom-Mir-2-P12j  Mom-Mir-2-P12k  Obi-Mir-2-P12  Ofu-Mir-2-P12  Ovu-Mir-2-P12  Pau-Mir-2-P12  Pdu-Mir-2-P12  Ple-Mir-2  Pve-Mir-2-P12  Rph-Mir-2-P12  War-Mir-2-P12 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Protostomia
Genome context
(GCA_018389105_NPO)
JACATO010000013.1: 409697-409758 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGUGGGGGGUUGACAAGGCUGUGCGGUGCUGACCAGGUGGUUGUGAUGUGCUGAGAUCAAUGUUCAUAUCACAGCCUGCUUGGAUCAGUACAGCGCUGGCUGCUGCUGCUGCUGGGUCAA
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Structure
        10         20         30         40         50         
GGGGUGGGGGGUUGACAA-    -    G       -      -|           CUGAGA 
                   GGCU GUGC GUGCUGA CCAGGU GGUUGUGAUGUG      U
                   UCGG CGCG CAUGACU GGUUCG CCGACACUAUAC      C
AACUGGGUCGUCGUCGUCG    U    A       A      U^           UUGUAA 
120       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Npo-Mir-2-P12_5p* (predicted)

mirBase accessionNone
Sequence
0- CUGACCAGGUGGUUGUGAUGUG -22
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Mature sequence

Npo-Mir-2-P12_3p (predicted)

mirBase accessionNone
Sequence
38- UAUCACAGCCUGCUUGGAUCAGUA -62
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