MirGeneDB ID | Npo-Mir-2-o48a |
---|---|
Family name | MIR-2 (all species) |
Seed | AUCACAG |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | Npo-Mir-2-o45 Npo-Mir-2-o47 Npo-Mir-2-o48b Npo-Mir-2-o49 Npo-Mir-2-P12 |
Orthologues | Esc-Mir-2-o48-v1 Esc-Mir-2-o48-v2 Gsp-Mir-2 Obi-Mir-2-o48-v1 Obi-Mir-2-o48-v2 Ovu-Mir-2-o48-v1 Ovu-Mir-2-o48-v2 Ple-Mir-2 |
Node of Origin (locus) | N. pompilius |
Node of Origin (family) | Protostomia |
Genome context (GCA_018389105_NPO) |
JACATO010000013.1: 410153-410212 [+] Ensembl |
Precursor (pre-Mir +30nt flank) | CUGGAAGGGAAAAGUUGUUGCUGGAUUGAGGGCAUCAAAGUGGUGGUGAAAUGUUACCGCCUGUCAUAUCACAGCCAACUUUGAUGAGCUUUGAUUCGGUGCUGCUCGUCUACAGGAACUGet precursor sequence |
Structure | 10 20 30 40 50 CUGGAAGGGAAAAGUUGUU- UG G- -| G A UUACC GCUGGAU AGG CAUCAAAG UGGU GUGA AUG \ UGGCUUA UUC GUAGUUUC ACCG CACU UAC G UCAAGGACAUCUGCUCGUCG GU GA A^ A A UGUCC . 110 100 90 80 70 60 |
Deep sequencing | |
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17) |
Star sequence | Npo-Mir-2-o48a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GGCAUCAAAGUGGUGGUGAAAUG -23
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|
Mature sequence | Npo-Mir-2-o48a_3p (predicted) |
mirBase accession | None |
Sequence |
36- UAUCACAGCCAACUUUGAUGAGCU -60
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|