| MirGeneDB ID | Esc-Mir-2-o48-v1 |
|---|---|
| Family name | MIR-2 (all species) |
| Seed | CACAGCC |
| Species | Hawaiian bobtail squid (Euprymna scolopes) |
| MiRBase ID | |
| Paralogues | Esc-Mir-2-o45-v1 Esc-Mir-2-o45-v2 Esc-Mir-2-o47a-v1 Esc-Mir-2-o47a-v2 Esc-Mir-2-o47b Esc-Mir-2-o47c Esc-Mir-2-o47d Esc-Mir-2-o48-v2 Esc-Mir-2-o49 Esc-Mir-2-P12 |
| Orthologues | Gsp-Mir-2 Npo-Mir-2-o48a Npo-Mir-2-o48b Obi-Mir-2-o48-v1 Obi-Mir-2-o48-v2 Ovu-Mir-2-o48-v1 Ovu-Mir-2-o48-v2 Ple-Mir-2 |
| Node of Origin (locus) | Cephalopoda |
| Node of Origin (family) | Protostomia |
| Genome context (GCA_004765925.1_miRNA_LOCI) |
|
| Precursor (pre-Mir +30nt flank) | UCACCAAAGUGGUGGUGAUGUGUUUCUAAUUCCAUUCCCAUAUCACAGCCAGCUUUGAUGAGCUGet precursor sequence |
| Structure | 10 20 30 --- C -| G UUUCUAA UCA CAAAG UGGU GUGAUGUG U AGU GUUUC ACCG CACUAUAC U UCG A G^ A CCUUACC 60 50 40 |
| Deep sequencing | |
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Esc-Mir-2-o48-v1_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- UCACCAAAGUGGUGGUGAUG -20
Get sequence
|
| Mature sequence | Esc-Mir-2-o48-v1_3p |
| mirBase accession | None |
| Sequence |
42- UCACAGCCAGCUUUGAUGAGCU -64
Get sequence
|
