MirGeneDB 3.0
MirGeneDB ID

Esc-Mir-2-o47c

Family name MIR-2 (all species)
Seed AUCACAG
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues Esc-Mir-2-o45-v1  Esc-Mir-2-o45-v2  Esc-Mir-2-o47a-v1  Esc-Mir-2-o47a-v2  Esc-Mir-2-o47b  Esc-Mir-2-o47d  Esc-Mir-2-o48-v1  Esc-Mir-2-o48-v2  Esc-Mir-2-o49  Esc-Mir-2-P12 
Orthologues Gsp-Mir-2  Npo-Mir-2-o47  Obi-Mir-2-o47c  Ovu-Mir-2-o47c  Ple-Mir-2 
Node of Origin (locus) Coleoidea
Node of Origin (family) Protostomia
Genome context
(GCA_004765925.1_miRNA_LOCI)		 Esc-Mir-2-o22j_pre_SRIE01000454.1:383389-383648: 101-160 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAUUUAACCUUUGACCUAAGCCGAUUGCAACUCCUCAAAGGGCUGUGAUACGCUGCCAAUAUGACAUAUCACAGCUAGCUUUGAUGAGCUGGAAUAUGGUUCUCUUGCACAUAAGUUGUC
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Structure
        10         20         30        40          50        
AAUUUAACCUUUGACCUA-     -   G  A   C      --|         CGCUGCC 
                   AGCCG AUU CA CUC UCAAAG  GGCUGUGAUA       A
                   UUGGU UAA GU GAG AGUUUC  UCGACACUAU       A
CUGUUGAAUACACGUUCUC     A   G  C   U      GA^         ACAGUAU 
.       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsNo
Tissue expression
-   +
Li
Star sequence

Esc-Mir-2-o47c_5p*
mirBase accessionNone
Sequence 
0- CUCCUCAAAGGGCUGUGAUACG -22
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Mature sequence

Esc-Mir-2-o47c_3p
mirBase accessionNone
Sequence 
36- UAUCACAGCUAGCUUUGAUGAGCU -60
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