| MirGeneDB ID | Obi-Mir-2-o47c |
|---|
| Family name |
MIR-2 (all species) |
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| Seed |
AUCACAG |
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| Species |
California two-spot octopus (Octopus bimaculoides) |
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| MiRBase ID |
|
|---|
| Paralogues |
Obi-Mir-2-o45-v1
Obi-Mir-2-o45-v2
Obi-Mir-2-o46-v1
Obi-Mir-2-o46-v2
Obi-Mir-2-o47a
Obi-Mir-2-o47b
Obi-Mir-2-o47d
Obi-Mir-2-o48-v1
Obi-Mir-2-o48-v2
Obi-Mir-2-o49
Obi-Mir-2-P12
|
|---|
| Orthologues |
Esc-Mir-2-o47c
Gsp-Mir-2
Npo-Mir-2-o47
Ovu-Mir-2-o47c
Ple-Mir-2
|
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| Node of Origin (locus) |
Octopus
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(PRJNA270931_OBI) |
KQ419829: 50292-50351 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GCACCCUGAAUUCUAGUGGCUUAGUUGUAACUCAUCAAAUAACUGGGAUAUGCUGCUAUUAGGACAUAUCACAGCUAGCUUUGAUGAGCUGGGACUUGGUUUAUUUUGGCACACUUCUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GCACCCUGAAUUCUAGU-- U G A --| A G CUGCU
GGCU AGUU UA CUCAUCAAA UA CUG GAUAUG A
UUGG UCAG GU GAGUAGUUU AU GAC CUAUAC U
ACUCUUCACACGGUUUUAU U G C CG^ C A AGGAU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Star sequence |
Obi-Mir-2-o47c_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUCAUCAAAUAACUGGGAUAUG -22
Get sequence
|
|---|
| Mature sequence |
Obi-Mir-2-o47c_3p |
| mirBase accession | None |
|---|
| Sequence |
36- UAUCACAGCUAGCUUUGAUGAGCU -60
Get sequence
|
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