MirGeneDB 3.0

MirGeneDB ID

Mgi-Mir-2-o57

Family name MIR-2 (all species)
Seed AUCACAG
Species Pacific oyster (Magallana gigas)
MiRBase ID
Paralogues Mgi-Mir-2-o56  Mgi-Mir-2-o58a  Mgi-Mir-2-o58b  Mgi-Mir-2-o59  Mgi-Mir-2-o60  Mgi-Mir-2-o61  Mgi-Mir-2-o62  Mgi-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) C. gigas
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)
scaffold602: 445414-445474 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAUAUUUUUGGAAGUUUGAAAAAGUGUAGCCAUCAAAGUGACUGUGAAAUGUUGAAUUAAAAUUCAUAUCACAGCCAGCUUUGAUGAGCUUCAUGUUUCUGUCUGACACCAUUUCAGUCU
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Structure
        10           20        30         40         50         
CAAUAUUUUUGGAAGUUU---    AA   U   -         GA-|     A   UUGAAU 
                     GAAA  GUG AGC CAUCAAAGU   CUGUGA AUG      \
                     CUUU  UAC UCG GUAGUUUCG   GACACU UAC      U
UCUGACUUUACCACAGUCUGU    G-   U   A         ACC^     A   UUAAAA 
 .       110       100         90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- F- L- Ea Eg Fe Gi Ha He Ju La Ma Ma Ma Pe Re Sp Um
Star sequence

Mgi-Mir-2-o57_5p*

mirBase accessionNone
Sequence
0- CCAUCAAAGUGACUGUGAAAUG -22
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Mature sequence

Mgi-Mir-2-o57_3p

mirBase accessionNone
Sequence
37- UAUCACAGCCAGCUUUGAUGAGCU -61
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