MirGeneDB ID | Mgi-Mir-2-o57 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
Mgi-Mir-2-o56
Mgi-Mir-2-o58a
Mgi-Mir-2-o58b
Mgi-Mir-2-o59
Mgi-Mir-2-o60
Mgi-Mir-2-o61
Mgi-Mir-2-o62
Mgi-Mir-2-P12
|
Orthologues |
Gsp-Mir-2
Ple-Mir-2
|
Node of Origin (locus) |
C. gigas
|
Node of Origin (family) |
Protostomia
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Genome context (CGI_GCA_000297895.1) |
scaffold602: 445414-445474 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CAAUAUUUUUGGAAGUUUGAAAAAGUGUAGCCAUCAAAGUGACUGUGAAAUGUUGAAUUAAAAUUCAUAUCACAGCCAGCUUUGAUGAGCUUCAUGUUUCUGUCUGACACCAUUUCAGUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
CAAUAUUUUUGGAAGUUU--- AA U - GA-| A UUGAAU
GAAA GUG AGC CAUCAAAGU CUGUGA AUG \
CUUU UAC UCG GUAGUUUCG GACACU UAC U
UCUGACUUUACCACAGUCUGU G- U A ACC^ A UUAAAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Star sequence |
Mgi-Mir-2-o57_5p* |
mirBase accession | None |
Sequence |
0- CCAUCAAAGUGACUGUGAAAUG -22
Get sequence
|
Mature sequence |
Mgi-Mir-2-o57_3p |
mirBase accession | None |
Sequence |
37- UAUCACAGCCAGCUUUGAUGAGCU -61
Get sequence
|