Mir-2-o47d

MirGeneDB ID

Ovu-Mir-2-o47d

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Common octopus (Octopus vulgaris)

MiRBase ID

Paralogues

Ovu-Mir-2-o45-v1 Ovu-Mir-2-o45-v2 Ovu-Mir-2-o46-v1 Ovu-Mir-2-o46-v2 Ovu-Mir-2-o47a Ovu-Mir-2-o47b Ovu-Mir-2-o47c Ovu-Mir-2-o48-v1 Ovu-Mir-2-o48-v2 Ovu-Mir-2-o49 Ovu-Mir-2-P12

Orthologues

Esc-Mir-2-o47d Gsp-Mir-2 Npo-Mir-2-o47 Obi-Mir-2-o47d Ple-Mir-2

Node of Origin (locus)

Coleoidea

Node of Origin (family)

Protostomia

Genome context
(GCA_003957725.1_ASM395772v1_OVU)

RXHP01057295.1: 22007-22066 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AUUUGUUUUGAUGUUCCGACCCUAUUGUAACUCAUUAAAGAGCUGGGAUAUGCUGACUUUCUGACAUAUCACAGCUAGCUUUGAUGAGCUACACUUGGGUUAUUUCACCUCCAAUUUACU

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Structure

        10          20        30        40          50        
AUUUGUUUUGAUGUUCC--     UAU    A          --|    G      CUGAC 
                   GACCC   UGUA CUCAUUAAAG  AGCUG GAUAUG     U
                   UUGGG   ACAU GAGUAGUUUC  UCGAC CUAUAC     U
UCAUUUAACCUCCACUUUA     UUC    C          GA^    A      AGUCU 
.       110       100        90        80        70        60

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov	Ov

Star sequence

Ovu-Mir-2-o47d_5p*

mirBase accession

None

Sequence

0- CUCAUUAAAGAGCUGGGAUAUG -22

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Mature sequence

Ovu-Mir-2-o47d_3p

mirBase accession

None

Sequence

36- UAUCACAGCUAGCUUUGAUGAGCU -60

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