MirGeneDB 3.0

MirGeneDB ID

Cte-Mir-2-o19

Family name MIR-2 (all species)
Seed AUCACAG
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-2e-1
Paralogues Cte-Mir-2-o13  Cte-Mir-2-o14  Cte-Mir-2-o15  Cte-Mir-2-o16  Cte-Mir-2-o17  Cte-Mir-2-o18  Cte-Mir-2-P12 
Orthologues Gsp-Mir-2  Ple-Mir-2 
Node of Origin (locus) C. teleta
Node of Origin (family) Protostomia
Genome context
(Capitella_teleta_v1.0)
CAPTEscaffold_36111: 940-1000 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAAUUGCUUGCUUUUGCGAAUAUUCUGCGCUCUGAGUGGCUGUGAUAUGUUCAGUUGAGUCAGCAUAUCACAGUCAAUGCUUUGGGCUCAGAAUAUUCUGCUCUCUUUCUGCUCUUCCU
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Structure
        10          20        30           40        50        
UUGAAUUGCUUGCUUUU-  -          C    U    ---|           UUCAGU 
                  GC GAAUAUUCUG GCUC GAGU   GGCUGUGAUAUG      U
                  CG CUUAUAAGAC CGGG UUCG   CUGACACUAUAC      G
UCCUUCUCGUCUUUCUCU  U          U    U    UAA^           GACUGA 
 .       110       100        90        80        70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-2 genes were present in the last common ancestor of protostomes and how the multiple paralogues in lophotrochozoans relate to the four Mir-2 genes in arthropods. Thus all lophotrochozoan genes aside from Mir-2-P12 are classified as orphans pending further data and analysis.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Ea Fe Fe La La Ma Ma To
Star sequence

Cte-Mir-2-o19_5p*

mirBase accessionNone
Sequence
0- GCUCUGAGUGGCUGUGAUAUG -21
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Mature sequence

Cte-Mir-2-o19_3p

mirBase accessionMIMAT0013527
Sequence
37- UAUCACAGUCAAUGCUUUGGGCUC -61
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