MirGeneDB ID | Lpo-Mir-71-P12 |
Family name |
MIR-71 (all species) |
Seed |
GAAAGAC |
Species |
Atlantic horseshoe crab (Limulus polyphemus) |
MiRBase ID |
|
Paralogues |
Lpo-Mir-71-P7
Lpo-Mir-71-P8
Lpo-Mir-71-P9
Lpo-Mir-71-P10
Lpo-Mir-71-P11
Lpo-Mir-71-P13
|
Orthologues |
Aae-Mir-71
Aga-Mir-71
Agr-Mir-71
Asu-Mir-71
Bfl-Mir-71
Bge-Mir-71
Bla-Mir-71
Cbr-Mir-71
Cel-Mir-71
Cte-Mir-71
Dgr-Mir-71
Dlo-Mir-71
Dma-Mir-71
Dpu-Mir-71
Egr-Mir-71
Esc-Mir-71
Hme-Mir-71
Hru-Mir-71
Isc-Mir-71
Lgi-Mir-71
Lhy-Mir-71
Llo-Mir-71
Mgi-Mir-71
Mom-Mir-71
Npo-Mir-71
Obi-Mir-71
Ofu-Mir-71
Ovu-Mir-71
Pau-Mir-71
Pca-Mir-71
Pdu-Mir-71
Pfl-Mir-71
Ple-Mir-71
Pmi-Mir-71
Pve-Mir-71
Rph-Mir-71
Sko-Mir-71
Snu-Mir-71
Spu-Mir-71
Tca-Mir-71
War-Mir-71
|
Node of Origin (locus) |
L. polyphemus
|
Node of Origin (family) |
Nephrozoa
|
Genome context (GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic) |
NW_013666934.1: 89649-89707 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACAAGAAAGAUAAGUCCCCAUCUUUUCCAUGAAAGACAUGGGUAGUGAGAUGACCCGCUCUGCACAUCUCACUAUCUUGUCUUUGACGGAACAGUUGGAAAAGUUCUGGCGAAUGAAG
Get precursor sequence
|
Structure | 10 20 30 40 50
AACAAGAAAGAUAAGUCC--| U U AUG U ACCCG
CCA CU UUCC AAAGACA GGGUAGUGAGAUG C
GGU GA AAGG UUUCUGU UCUAUCACUCUAC U
GAAGUAAGCGGUCUUGAAAA^ U C CAG - ACGUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Lpo-Mir-71-P12_5p |
mirBase accession | None |
Sequence |
0- UGAAAGACAUGGGUAGUGAGAUG -23
Get sequence
|
Star sequence |
Lpo-Mir-71-P12_3p* |
mirBase accession | None |
Sequence |
37- UCUCACUAUCUUGUCUUUGACG -59
Get sequence
|