MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-71-P8

Family name MIR-71 (all species)
Seed CUCACUA
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-71-P7  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Egr-Mir-71  Esc-Mir-71  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Nephrozoa
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013665701.1: 206173-206230 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGUUAACAUAAGGAUUAACCAUCUCUUCCGUGAAAGACAUGGGUAGUGAGAUGACCUGUUCUAGCAUCUCACUACCUUGUCUUUGACGGAACAGUAGGAAAUAUUCAUCAGAUUAUAA
Get precursor sequence
Structure
        10          20        30        40        50         
CGUUAACAUAAGGAUUAA--| AU  C      G       U             ACCUG 
                    CC  CU UUCCGU AAAGACA GGGUAGUGAGAUG     \
                    GG  GA AAGGCA UUUCUGU UCCAUCACUCUAC     U
AAUAUUAGACUACUUAUAAA^ AU  C      G       -             GAUCU 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Star sequence

Lpo-Mir-71-P8_5p*
mirBase accessionNone
Sequence 
0- UGAAAGACAUGGGUAGUGAGAUG -23
Get sequence
Mature sequence

Lpo-Mir-71-P8_3p
mirBase accessionNone
Sequence 
36- UCUCACUACCUUGUCUUUGACG -58
Get sequence