MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-71-o8

Family name MIR-71 (all species)
Seed GAAAGAC
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-71b
Paralogues Gsa-Mir-71-o7 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P8  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) G. salaris
Node of Origin (family) Bilateria
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006953439: 69489-69543 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71-o8)		 Mir-2-o163 scf7180006953439: 69381-69446 [-] UCSC Ensembl
Mir-71-o8 scf7180006953439: 69489-69543 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUAAGUUCUCUGUUAUUCUGAUACGCUUGAUGAAAGACAUGGGUAAUGAGUAUCAUCUAAGUUCUCAUUAUUCCUGUCCUUCAUAAUUCGUUUCAUUCUGCGUCAGACUGUUCAA
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Structure
        10          20        30        40        50       
GUAAGUUCUCUGUUAUUC--|  U   CUUG     A    U          UAUCAU 
                    UGA ACG    AUGAA GACA GGGUAAUGAG      \
                    ACU UGC    UACUU CUGU CUUAUUACUC      C
AACUUGUCAGACUGCGUCUU^  U   UUAA     C    C          UUGAAU 
   110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Gs
Mature sequence

Gsa-Mir-71-o8_5p
mirBase accessionMIMAT0035250
Sequence 
0- UGAAAGACAUGGGUAAUGAGUA -22
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Star sequence

Gsa-Mir-71-o8_3p*
mirBase accessionMIMAT0035251
Sequence 
33- CUCAUUAUUCCUGUCCUUCAUA -55
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