MirGeneDB 3.0
MirGeneDB ID

Cbr-Mir-71

Family name MIR-71 (all species)
Seed GAAAGAC
Species Roundworm (Caenorhabditis briggsae)
MiRBase ID cbr-mir-71
Paralogues
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Ava-Mir-71-P20  Ava-Mir-71-P21  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cel-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Egr-Mir-71  Esc-Mir-71  Gsa-Mir-71-o7  Gsa-Mir-71-o8  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pcr-Mir-71-v1  Pcr-Mir-71-v2  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o5  Sma-Mir-71-o6  Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o2  Sme-Mir-71-o3  Sme-Mir-71-o4  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Nephrozoa
Node of Origin (family) Nephrozoa
Genome context
(CB4)		 I: 2725619-2725677 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-71)		 Mir-2-o3 I: 2714104-2714186 [-] Ensembl
Mir-71 I: 2725619-2725677 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUGUUCCUUUAAAAAAUACAGCUGAACGAUGAAAGACAUGGGUAGUGAGACGUCGGAGCCUCGUCGUAUCACUAUUCUGUUUUUCGCCGAUCAGUCCCCUUACUACUGCUACCGUACC
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Structure
        10        20          30        40        50         
CAUGUUCCUUUAAAAAAUACA--|    A  A         U         G   UCGGA 
                       GCUGA CG UGAAAGACA GGGUAGUGA ACG     G
                       UGACU GC GCUUUUUGU CUUAUCACU UGC     C
CCAUGCCAUCGUCAUCAUUCCCC^    A  C         -         A   UGCUC 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ea Ma Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Wh Yo Yo
Mature sequence

Cbr-Mir-71_5p
mirBase accessionMIMAT0000481
Sequence 
0- UGAAAGACAUGGGUAGUGAGACG -23
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Co-mature sequence

Cbr-Mir-71_3p
mirBase accessionNone
Sequence 
37- UAUCACUAUUCUGUUUUUCGCC -59
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