MirGeneDB 2.1

MirGeneDB ID

Obi-Mir-71

Family name MIR-71 (all species)
Seed GAAAGAC
Species California two-spot octopus (Octopus bimaculoides)
MiRBase ID
Paralogues
Orthologues Aae-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cgi-Mir-71  Csc-Mir-71-P14  Csc-Mir-71-P15  Cte-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P1  Efe-Mir-71-P2  Efe-Mir-71-P3  Esc-Mir-71  Hme-Mir-71  Isc-Mir-71  Lan-Mir-71-P4  Lan-Mir-71-P5  Lgi-Mir-71  Lpo-Mir-71-P7  Lpo-Mir-71-P8  Lpo-Mir-71-P9  Lpo-Mir-71-P10  Lpo-Mir-71-P11  Lpo-Mir-71-P12  Lpo-Mir-71-P13  Npo-Mir-71  Ovu-Mir-71  Pfl-Mir-71  Pmi-Mir-71  Sko-Mir-71  Sme-Mir-71-P16a  Sme-Mir-71-P16b  Sme-Mir-71-P17  Sme-Mir-71-P18  Sme-Mir-71-P19  Spu-Mir-71  Tca-Mir-71 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(PRJNA270931_OBI)
KQ419829: 51632-51690 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUUUCCACUAUAACAAUUGUGUUUGGCUUGAAAGACACGGGUAGUGAGAUGUUAUUUUAUAAACUUCUUACUACCCUGUCUUUCGAGCGGAUCACUUUACAUUCUUGCUGCUGAUGA
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Structure
        10        20          30        40        50         
UUUUUUCCACUAUAACAAUU--|  U  G            C           UGUUAUU 
                      GUG UU GCUUGAAAGACA GGGUAGUGAGA       U
                      CAC AG CGAGCUUUCUGU CCCAUCAUUCU       U
AGUAGUCGUCGUUCUUACAUUU^  U  G            -           UCAAAUA 
       110       100        90        80         70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on both arms
3' NTU No
MotifsNo
Tissue expression
 +
To
Mature sequence

Obi-Mir-71_5p

mirBase accessionNone
Sequence
0- UGAAAGACACGGGUAGUGAGAUG -23
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Star sequence

Obi-Mir-71_3p*

mirBase accessionNone
Sequence
37- UCUUACUACCCUGUCUUUCGAG -59
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