Mir-71-o1b

MirGeneDB ID

Sme-Mir-71-o1b

Family name

MIR-71 (all species)

Seed

GAAAGAC

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-71a-2

Paralogues

Sme-Mir-71-o1a Sme-Mir-71-o2 Sme-Mir-71-o3 Sme-Mir-71-o4

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Efe-Mir-71-P1 Egr-Mir-71 Esc-Mir-71 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 War-Mir-71

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000001_dd_Smes_g4_1: 13481649-13481705 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-71-o1b)

Mir-71-o1b NNSW01000001_dd_Smes_g4_1: 13481649-13481705 [+] UCSC Ensembl
Mir-2-o122b NNSW01000001_dd_Smes_g4_1: 13481745-13481799 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAAGAAUUUUAUUUUUUCUUGGAUAUAACUGAAAGACACGGGUAGUGAGAUAUGGAUUUUUCAUCUCUAUAUUCGUGUCUUUCAUAUUUAUUCACGAUGGUCAUCAUAAUUGUUCA

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Structure

        10          20        30        40        50        
CAAAGAAUUUUAUUUUU--| U      UAAC               GU     AUGGA 
                   UC UGGAUA    UGAAAGACACGGGUA  GAGAU     \
                   AG ACUUAU    ACUUUCUGUGCUUAU  CUCUA     U
ACUUGUUAAUACUACUGGU^ C      UUAU               AU     CUUUU 
     110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Ne	Wh	Wh	Wh

Mature sequence

Sme-Mir-71-o1b_5p

mirBase accession

MIMAT0003984

Sequence

0- UGAAAGACACGGGUAGUGAGAU -22

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Star sequence

Sme-Mir-71-o1b_3p*

mirBase accession

MIMAT0013772

Sequence

35- CUCUAUAUUCGUGUCUUUCAUA -57

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