MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-71-o2

Family name MIR-71 (all species)
Seed GAAAGAC
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-71b
Paralogues Sme-Mir-71-o1a  Sme-Mir-71-o1b  Sme-Mir-71-o3  Sme-Mir-71-o4 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Efe-Mir-71-P2  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Nephrozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000131_dd_Smes_g4_131: 1191188-1191254 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71-o2)		 Mir-71-o2 NNSW01000131_dd_Smes_g4_131: 1191188-1191254 [+] UCSC Ensembl
Mir-2-o123 NNSW01000131_dd_Smes_g4_131: 1191304-1191374 [+] UCSC Ensembl
Mir-2-o124 NNSW01000131_dd_Smes_g4_131: 1191422-1191481 [+] UCSC Ensembl
Mir-2-o125 NNSW01000131_dd_Smes_g4_131: 1191539-1191598 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUGUUGUGUAGGUGAUUCAGUACUCUUUGAAAGACACAGGUAGUGGGACAGAUAUUAUCUAAUAAAAGCUUGUCCUUCUAAUGUGUUUUUCGAAAACCAUUGAAUCAAUCAUCAGUUCACUAGU
Get precursor sequence
Structure
        10          20        30        40        50        60   
AUUUUGUUGUGUAGGUG--|      ACUC             GG   U     AGAUAUUAUC 
                   AUUCAGU    UUUGAAAGACACA  UAG GGGAC          U
                   UAAGUUA    AAGCUUUUUGUGU  AUC UCCUG          A
UGAUCACUUGACUACUAAC^      CCAA             A-   U     UUCGAAAAUA 
     120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Mature sequence

Sme-Mir-71-o2_5p
mirBase accessionMIMAT0003985
Sequence 
0- UGAAAGACACAGGUAGUGGGAC -22
Get sequence
Star sequence

Sme-Mir-71-o2_3p*
mirBase accessionMIMAT0003986
Sequence 
45- UCCUUCUAAUGUGUUUUUCGAA -67
Get sequence