Mir-71-o4

MirGeneDB ID

Sme-Mir-71-o4

Family name

MIR-71 (all species)

Seed

GUGUUAA

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-2167

Paralogues

Sme-Mir-71-o1a Sme-Mir-71-o1b Sme-Mir-71-o2 Sme-Mir-71-o3

Orthologues

Aae-Mir-71 Aga-Mir-71 Agr-Mir-71 Asu-Mir-71 Bfl-Mir-71 Bge-Mir-71 Bla-Mir-71 Cbr-Mir-71 Cel-Mir-71 Cte-Mir-71 Dgr-Mir-71 Dlo-Mir-71 Dma-Mir-71 Dpu-Mir-71 Egr-Mir-71 Esc-Mir-71 Hme-Mir-71 Hru-Mir-71 Isc-Mir-71 Lan-Mir-71-P4 Lgi-Mir-71 Lhy-Mir-71 Llo-Mir-71 Mgi-Mir-71 Mom-Mir-71 Npo-Mir-71 Obi-Mir-71 Ofu-Mir-71 Ovu-Mir-71 Pau-Mir-71 Pca-Mir-71 Pdu-Mir-71 Pfl-Mir-71 Ple-Mir-71 Pmi-Mir-71 Pve-Mir-71 Rph-Mir-71 Sko-Mir-71 Snu-Mir-71 Spu-Mir-71 Tca-Mir-71 War-Mir-71

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Bilateria

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000025_dd_Smes_g4_25: 5887508-5887571 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-71-o4)

Mir-71-o4 NNSW01000025_dd_Smes_g4_25: 5887508-5887571 [+] UCSC Ensembl
Mir-2-o127 NNSW01000025_dd_Smes_g4_25: 5887622-5887680 [+] UCSC Ensembl
Mir-2-o128 NNSW01000025_dd_Smes_g4_25: 5887731-5887790 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAAAUUGAAUUGUGAAUGCAAUUCUAUCUUUGAAAGACAAGUCUUAUACAUUCUUAGUGUCAAACAUCCAAGUGUGUUAAGCUGGUCUUUCAGAGCAUGAAUUCGUUAAUCGUCAAAUGUUUAA

Get precursor sequence

Structure

        10          20        30        40         50        60 
CAAAUUGAAUUGUGAAU-  -|    UAU           A  U    -      CUUAGUGU 
                  GC AAUUC   CUUUGAAAGAC AG CUUA UACAUU        C
                  UG UUAAG   GAGACUUUCUG UC GAAU GUGUGA        A
AAUUUGUAAACUGCUAAU  C^    UAC           G  -    U      ACCUACAA 
  120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Se	Ne	Wh	Wh	Wh

Star sequence

Sme-Mir-71-o4_5p* (predicted)

mirBase accession

None

Sequence

0- UGAAAGACAAGUCUUAUACAUU -22

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Mature sequence

Sme-Mir-71-o4_3p

mirBase accession

MIMAT0011264

Sequence

42- UGUGUUAAGCUGGUCUUUCAGA -64

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