MirGeneDB ID | Pdu-Mir-71 |
Family name |
MIR-71 (all species) |
Seed |
GAAAGAC |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-71
Aga-Mir-71
Agr-Mir-71
Asu-Mir-71
Ava-Mir-71-P20
Ava-Mir-71-P21
Bfl-Mir-71
Bge-Mir-71
Bla-Mir-71
Cbr-Mir-71
Cel-Mir-71
Csc-Mir-71-P14
Csc-Mir-71-P15
Cte-Mir-71
Dgr-Mir-71
Dlo-Mir-71
Dma-Mir-71
Dpu-Mir-71
Efe-Mir-71-P1
Efe-Mir-71-P2
Efe-Mir-71-P3
Egr-Mir-71
Esc-Mir-71
Gsa-Mir-71-o7
Gsa-Mir-71-o8
Hme-Mir-71
Hru-Mir-71
Isc-Mir-71
Lan-Mir-71-P4
Lan-Mir-71-P5
Lgi-Mir-71
Lhy-Mir-71
Llo-Mir-71
Lpo-Mir-71-P7
Lpo-Mir-71-P8
Lpo-Mir-71-P9
Lpo-Mir-71-P10
Lpo-Mir-71-P11
Lpo-Mir-71-P12
Lpo-Mir-71-P13
Mgi-Mir-71
Mom-Mir-71
Npo-Mir-71
Obi-Mir-71
Ofu-Mir-71
Ovu-Mir-71
Pau-Mir-71
Pca-Mir-71
Pcr-Mir-71-v1
Pcr-Mir-71-v2
Pfl-Mir-71
Ple-Mir-71
Pmi-Mir-71
Pve-Mir-71
Rph-Mir-71
Sko-Mir-71
Sma-Mir-71-o5
Sma-Mir-71-o6
Sme-Mir-71-o1a
Sme-Mir-71-o1b
Sme-Mir-71-o2
Sme-Mir-71-o3
Sme-Mir-71-o4
Snu-Mir-71
Spu-Mir-71
Tca-Mir-71
Tur-Mir-71-P6a
Tur-Mir-71-P6b
War-Mir-71
|
Node of Origin (locus) |
Nephrozoa
|
Node of Origin (family) |
Nephrozoa
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000003.1: 67085298-67085356 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCGAGAGGAUUUGAAGGUCUUGAGCCCGUUGAAAGACAUGGGUAGUGAGAUGGAGAGAAAGAAACAGCUCGCUACCCUGUCUUUCCAGGGGACAGACCAAUUUGCUGGUGGCGCACCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCGAGAGGAUUUGAAG----| U AG GUU U A GAGAG
GUCU G CCC GAAAGACA GGGUAGUGAG UG A
CAGA C GGG CUUUCUGU CCCAUCGCUC AC A
CCCACGCGGUGGUCGUUUAAC^ - AG AC- - G AAAGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Mature sequence |
Pdu-Mir-71_5p |
mirBase accession | None |
Sequence |
0- UGAAAGACAUGGGUAGUGAGAUG -23
Get sequence
|
Star sequence |
Pdu-Mir-71_3p* |
mirBase accession | None |
Sequence |
37- GCUCGCUACCCUGUCUUUCCAG -59
Get sequence
|