MirGeneDB 3.0

MirGeneDB ID

Tur-Mir-71-P6a

Family name MIR-71 (all species)
Seed CUCACUA
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-71-1
Paralogues Tur-Mir-71-P6b 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Sma-Mir-71-o6  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  War-Mir-71 
Node of Origin (locus) T. urticae
Node of Origin (family) Nephrozoa
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)
HE587310.1: 2524818-2524890 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-71-P6a)
Mir-2-o142b HE587310.1: 2523054-2523117 [-] Ensembl
Mir-71-P6b HE587310.1: 2523836-2523908 [-] Ensembl
Mir-71-P6a HE587310.1: 2524818-2524890 [+] Ensembl
Mir-2-o142a HE587310.1: 2525606-2525669 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUAUAUAUUAUCGUUUGAUUUUUUGGUGUGAAAGACAUGGGUAGUGAGAUGUAACAAAUUGUAAUUAAUUUAACUAACAUCUCACUACUUUGUCUUUGGCGCUAAUUCAAACAUGACUCAUCAUGCUGUUG
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Structure
        10             20        30        40        50        60      
UAUUAUAUAUUAUCGUU-----|  UUUU       G       U             UAACAAAUUGUA 
                      UGA    UUGGUGU AAAGACA GGGUAGUGAGAUG            A
                      ACU    AAUCGCG UUUCUGU UUCAUCACUCUAC            U
GUUGUCGUACUACUCAGUACAA^  U---       G       -             AAUCAAUUUAAU 
 130       120       110          100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Star sequence

Tur-Mir-71-P6a_5p*

mirBase accessionMIMAT0023040
Sequence
0- UGAAAGACAUGGGUAGUGAGAUG -23
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Mature sequence

Tur-Mir-71-P6a_3p

mirBase accessionMIMAT0023041
Sequence
51- UCUCACUACUUUGUCUUUGGCG -73
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