MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-71-o6

Family name MIR-71 (all species)
Seed GAAAGAC
Species Blood fluke (Schistosoma mansoni)
MiRBase ID sma-mir-71b
Paralogues Sma-Mir-71-o5 
Orthologues Aae-Mir-71  Aga-Mir-71  Agr-Mir-71  Asu-Mir-71  Bfl-Mir-71  Bge-Mir-71  Bla-Mir-71  Cbr-Mir-71  Cel-Mir-71  Cte-Mir-71  Dgr-Mir-71  Dlo-Mir-71  Dma-Mir-71  Dpu-Mir-71  Egr-Mir-71  Esc-Mir-71  Hme-Mir-71  Hru-Mir-71  Isc-Mir-71  Lgi-Mir-71  Lhy-Mir-71  Llo-Mir-71  Mgi-Mir-71  Mom-Mir-71  Npo-Mir-71  Obi-Mir-71  Ofu-Mir-71  Ovu-Mir-71  Pau-Mir-71  Pca-Mir-71  Pdu-Mir-71  Pfl-Mir-71  Ple-Mir-71  Pmi-Mir-71  Pve-Mir-71  Rph-Mir-71  Sko-Mir-71  Snu-Mir-71  Spu-Mir-71  Tca-Mir-71  Tur-Mir-71-P6a  Tur-Mir-71-P6b  War-Mir-71 
Node of Origin (locus) Bilateria
Node of Origin (family) Nephrozoa
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601628.3: 9679749-9679802 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-71-o6)		 Mir-71-o6 HE601628.3: 9679749-9679802 [+] UCSC Ensembl
Mir-2-o133 HE601628.3: 9679871-9679943 [+] UCSC Ensembl
Mir-2-o134 HE601628.3: 9679986-9680055 [+] UCSC Ensembl
Mir-2-o135 HE601628.3: 9680098-9680158 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGUCCCUUGGUCUGUCUAGUCCGUUUGCCAUGAAAGACUUGAGUAGUGAGACGCUUACAGCGUGGUUUUUUCCCUUCGGCGCCUCAUACUGAGUCUUUCCCGGCUCACUGGCCU
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Structure
        10        20        30        40        50        60      
UGUCCCUUGGUCUGUCUAGUCCGUUUGCCAUGAA|     G    G    A  CUUACAGCGUGG 
                                  AGACUU AGUA UGAG CG            U
                                  UCUGAG UCAU ACUC GC            U
UCCGGUCACUCGGCCCUU----------------^     -    -    C  GGCUUCCCUUUU 
  110       100                         90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ad Ce Ce Ce Eg Eg Eg Eg Eg Eg Mi Mi Sc Sc Sc Sm Sm Sp Sp Sp
Mature sequence

Sma-Mir-71-o6_5p
mirBase accessionMIMAT0025043
Sequence 
0- UGAAAGACUUGAGUAGUGAGACG -23
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Star sequence

Sma-Mir-71-o6_3p*
mirBase accessionMIMAT0025044
Sequence 
32- UGGUUUUUUCCCUUCGGCGCCU -54
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