Mir-2-P4-v1

MirGeneDB ID

Aga-Mir-2-P4-v1

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

African malaria mosquito (Anopheles gambiae)

MiRBase ID

aga-mir-2-1

Paralogues

Aga-Mir-2-P1-v1 Aga-Mir-2-P1-v2 Aga-Mir-2-P2a Aga-Mir-2-P2b Aga-Mir-2-P3 Aga-Mir-2-P4-v2 Aga-Mir-2-P5a1 Aga-Mir-2-P5a2 Aga-Mir-2-P5b Aga-Mir-2-P7 Aga-Mir-2-P8

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Cbr-Mir-2-o4 Cel-Mir-2-o4 Csc-Mir-2-P4n Csc-Mir-2-P4o Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dan-Mir-2-P4b-v1 Dan-Mir-2-P4b-v2 Dma-Mir-2-P4 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4a-v2 Gpa-Mir-2-P4b-v1 Gpa-Mir-2-P4b-v2 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Arthropoda

Node of Origin (family)

Protostomia

Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic)

NC_064601.1: 106556282-106556351 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-2-P4-v1)

Mir-2-P4-v1 NC_064601.1: 106556282-106556351 [-] Ensembl
Mir-2-P4-v2 NC_064601.1: 106556284-106556349 [-] Ensembl
Mir-2-P3 NC_064601.1: 106556572-106556654 [-] Ensembl
Mir-2-P2b NC_064601.1: 106556743-106556806 [-] Ensembl
Mir-2-P2a NC_064601.1: 106557252-106557346 [-] Ensembl
Mir-2-P1-v1 NC_064601.1: 106557875-106557936 [-] Ensembl
Mir-2-P1-v2 NC_064601.1: 106557875-106557936 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

CCUUUCUCUCGGUACAAACGCAUGUCCUGUCUCUCAAAGUGGCUGUGAAAUGGUGCACUUUCGAUCCGAUAUCUCAUAUCACAGCCAGCUUUGAUGAGCUAGGCCGUGUGACGCUUUCGCCUAAAGGUUG

Get precursor sequence

Structure

        10          20        30          40        50        60   
CCUUUCUCUCGGUACAAA--      U    U   -      -|        A   GUGCACUUUC 
                    CGCAUG CCUG CUC UCAAAG UGGCUGUGA AUG          G
                    GUGUGC GGAU GAG AGUUUC ACCGACACU UAC          A
GUUGGAAAUCCGCUUUCGCA      C    C   U      G^        A   UCUAUAGCCU 
.       120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ab	Ab	He	He	Mi	Mi	Ov	Ov	Ov

Star sequence

Aga-Mir-2-P4-v1_5p*

mirBase accession

None

Sequence

0- CUCUCAAAGUGGCUGUGAAAUG -22

Get sequence

Mature sequence

Aga-Mir-2-P4-v1_3p

mirBase accession

MIMAT0009202

Sequence

46- UAUCACAGCCAGCUUUGAUGAGCU -70

Get sequence