Mir-2-o4

MirGeneDB ID

Cel-Mir-2-o4

Family name

MIR-2 (all species)

Seed

AUCACAG

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-43

Paralogues

Cel-Mir-2-o3 Cel-Mir-2-o5 Cel-Mir-2-P11

Orthologues

Aae-Mir-2-P4-v1 Aae-Mir-2-P4-v2 Aga-Mir-2-P4-v1 Aga-Mir-2-P4-v2 Bge-Mir-2-P4-v1 Bge-Mir-2-P4-v2 Cbr-Mir-2-o4 Csc-Mir-2-P4n Csc-Mir-2-P4o Dan-Mir-2-P4a-v1 Dan-Mir-2-P4a-v2 Dan-Mir-2-P4b-v1 Dan-Mir-2-P4b-v2 Dma-Mir-2-P4 Dme-Mir-2-P4a-v1 Dme-Mir-2-P4a-v2 Dme-Mir-2-P4b-v1 Dme-Mir-2-P4b-v2 Dmo-Mir-2-P4a-v1 Dmo-Mir-2-P4a-v2 Dmo-Mir-2-P4b-v1 Dmo-Mir-2-P4b-v2 Dpu-Mir-2-P4 Dsi-Mir-2-P4a-v1 Dsi-Mir-2-P4a-v2 Dsi-Mir-2-P4b-v1 Dsi-Mir-2-P4b-v2 Dya-Mir-2-P4a-v1 Dya-Mir-2-P4a-v2 Dya-Mir-2-P4b-v1 Dya-Mir-2-P4b-v2 Gpa-Mir-2-P4a-v1 Gpa-Mir-2-P4a-v2 Gpa-Mir-2-P4b-v1 Gpa-Mir-2-P4b-v2 Gsp-Mir-2 Hme-Mir-2-P4 Isc-Mir-2-P4 Lpo-Mir-2-P4h Lpo-Mir-2-P4i Lpo-Mir-2-P4j Lpo-Mir-2-P4k Lpo-Mir-2-P4l Ple-Mir-2 Tca-Mir-2-P4-v1 Tca-Mir-2-P4-v2

Node of Origin (locus)

Caenorhabditis

Node of Origin (family)

Protostomia

Genome context
(ce11)

chrII: 11889930-11889992 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-2-o4)

Mir-5594 chrII: 11865130-11865187 [-] UCSC Ensembl
Mir-279-P11 chrII: 11880959-11881025 [-] UCSC Ensembl
Mir-36-P8 chrII: 11889823-11889891 [+] UCSC Ensembl
Mir-2-o4 chrII: 11889930-11889992 [+] UCSC Ensembl
Mir-279-P10 chrII: 11890038-11890103 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGGGGUAACUAUUGGCACUAGUCGCCCGUGACAUCAAGAAACUAGUGAUUAUGCCAAACCACAGGGACAUAUCACAGUUUACUUGCUGUCGCGGGCGGUGCUGAGUUUAAGGCCUCUGAAAA

Get precursor sequence

Structure

        10        20          30         40        50        60 
AAGGGGUAACUAUUGGCAC    --           U    -|    A     U   CCAAAC 
                   UAGU  CGCCCGUGACA CAAG AAACU GUGAU AUG      C
                   GUCG  GCGGGCGCUGU GUUC UUUGA CACUA UAC      A
AAAAGUCUCCGGAAUUUGA    UG           C    A^    -     -   AGGGAC 
 120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Da	Ea	Mi	Wi	Yo	Yo

Star sequence

Cel-Mir-2-o4_5p*

mirBase accession

MIMAT0020308

Sequence

0- GACAUCAAGAAACUAGUGAUUAUG -24

Get sequence

Mature sequence

Cel-Mir-2-o4_3p

mirBase accession

MIMAT0000014

Sequence

40- UAUCACAGUUUACUUGCUGUCGC -63

Get sequence

Proposed targets

microrna.org: MIMAT0000014
TargetScanWorm: cel-miR-43