Mir-279-P11

MirGeneDB ID

Cel-Mir-279-P11

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Roundworm (Caenorhabditis elegans)

MiRBase ID

cel-mir-45

Paralogues

Cel-Mir-279-P10 Cel-Mir-279-P12 Cel-Mir-279-P13

Orthologues

Agr-Mir-279 Bpl-Mir-279 Cbr-Mir-279-P11a Cbr-Mir-279-P11b Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gsa-Mir-279 Gsp-Mir-279 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279

Node of Origin (locus)

Caenorhabditis

Node of Origin (family)

Protostomia

Genome context
(ce11)

chrII: 11880959-11881025 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-279-P11)

Mir-355 chrII: 11833564-11833623 [-] UCSC Ensembl
Mir-5594 chrII: 11865130-11865187 [-] UCSC Ensembl
Mir-279-P11 chrII: 11880959-11881025 [-] UCSC Ensembl
Mir-36-P8 chrII: 11889823-11889891 [+] UCSC Ensembl
Mir-2-o4 chrII: 11889930-11889992 [+] UCSC Ensembl
Mir-279-P10 chrII: 11890038-11890103 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAUUCAGCUGCUCAUGCACCAUGUGCCACGCUGGAUGUGCUCGUUAGUCAUAAUAUCCUCCACAAAGCAAGGACUAUGACUAGAGACACAUUCAGCUUGGCGCCGAAUGCAUUUUAUUUUUAAAUUU

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Structure

        10        20          30         40        50        60   
UAUUCAGCUGCUCAUGCACCAU--      C          -|  GU        AUAUCCUCCA 
                        GUGCCA GCUGGAUGUG CUC  UAGUCAUA          C
                        CGCGGU CGACUUACAC GAG  AUCAGUAU          A
UUUAAAUUUUUAUUUUACGUAAGC      U          A^  --        CAGGAACGAA 
     120       110       100        90          80        70

Deep sequencing

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Comment

It is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of protostomes and how the Drosophila Mir-279s relate to the other invertebrate Mir-279s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.

3' NTU

Motifs

Tissue expression

Da	Ea	Mi	Wi	Yo	Yo

Star sequence

Cel-Mir-279-P11_5p*

mirBase accession

MIMAT0020772

Sequence

0- CUGGAUGUGCUCGUUAGUCAUA -22

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Mature sequence

Cel-Mir-279-P11_3p

mirBase accession

MIMAT0000016

Sequence

46- UGACUAGAGACACAUUCAGCU -67

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Proposed targets

microrna.org: MIMAT0000016
TargetScanWorm: cel-miR-45