MirGeneDB 3.0

MirGeneDB ID

Sma-Mir-279

Family name

MIR-279 (all species)

Seed

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-mir-61

Paralogues

Orthologues

Aae-Mir-279-P1a Aae-Mir-279-P1b1 Aae-Mir-279-P1b2 Aae-Mir-279-P2 Aae-Mir-279-P3 Aae-Mir-279-P25 Aga-Mir-279-P1a Aga-Mir-279-P1b Aga-Mir-279-P2 Aga-Mir-279-P3 Aga-Mir-279-P25 Agr-Mir-279 Asu-Mir-279-o22 Asu-Mir-279-o23 Asu-Mir-279-o24 Asu-Mir-279-o25 Asu-Mir-279-o26 Ava-Mir-279-P21a Ava-Mir-279-P21b Ava-Mir-279-P22a Ava-Mir-279-P22b Ava-Mir-279-P23a Ava-Mir-279-P23b Ava-Mir-279-P24a Ava-Mir-279-P24b Bge-Mir-279-o5 Bge-Mir-279-o6 Bge-Mir-279-o7 Bge-Mir-279-P2 Bge-Mir-279-P3 Bko-Mir-279-o1 Bko-Mir-279-o2 Bpl-Mir-279 Cbr-Mir-279-P10 Cbr-Mir-279-P11a Cbr-Mir-279-P11b Cbr-Mir-279-P12 Cbr-Mir-279-P13 Cel-Mir-279-P10 Cel-Mir-279-P11 Cel-Mir-279-P12 Cel-Mir-279-P13 Csc-Mir-279-P9a Csc-Mir-279-P9b Cte-Mir-279-o34 Cte-Mir-279-o35 Cte-Mir-279-o36 Dan-Mir-279-P1 Dan-Mir-279-P2 Dan-Mir-279-P3 Dgr-Mir-279-o48 Dgr-Mir-279-o49 Dlo-Mir-279-o4 Dlo-Mir-279-P1 Dlo-Mir-279-P2 Dlo-Mir-279-P3 Dma-Mir-279-o8 Dma-Mir-279-o9 Dma-Mir-279-P1c Dma-Mir-279-P1d Dma-Mir-279-P2 Dma-Mir-279-P3 Dme-Mir-279-P1 Dme-Mir-279-P2 Dme-Mir-279-P3 Dmo-Mir-279-P1 Dmo-Mir-279-P2 Dmo-Mir-279-P3 Dpu-Mir-279-o8 Dpu-Mir-279-o9 Dpu-Mir-279-P1c Dpu-Mir-279-P1d Dpu-Mir-279-P2 Dpu-Mir-279-P3 Dsi-Mir-279-P1 Dsi-Mir-279-P2 Dsi-Mir-279-P3 Dya-Mir-279-P1 Dya-Mir-279-P2 Dya-Mir-279-P3 Eba-Mir-279 Efe-Mir-279-o37 Efe-Mir-279-o38 Efe-Mir-279-o39 Efe-Mir-279-o40 Efe-Mir-279-o41 Efe-Mir-279-o42 Efe-Mir-279-o43 Egr-Mir-279 Esc-Mir-279 Gpa-Mir-279-P1 Gpa-Mir-279-P2 Gpa-Mir-279-P3 Gsa-Mir-279 Gsp-Mir-279 Hme-Mir-279-o1 Hme-Mir-279-o2 Hme-Mir-279-P2 Hme-Mir-279-P3 Hru-Mir-279 Isc-Mir-279 Lan-Mir-279-P17 Lan-Mir-279-P18 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Lpo-Mir-279-P4 Lpo-Mir-279-P5 Lpo-Mir-279-P6 Lpo-Mir-279-P7 Lpo-Mir-279-P8 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ofu-Mir-279-o53 Ofu-Mir-279-o54 Ofu-Mir-279-o55 Ofu-Mir-279-o56 Ofu-Mir-279-o57 Ovu-Mir-279 Pau-Mir-279 Pca-Mir-279-o27 Pca-Mir-279-o28 Pca-Mir-279-o29 Pca-Mir-279-o30 Pca-Mir-279-o31 Pca-Mir-279-o32 Pca-Mir-279-o33 Pcr-Mir-279 Pdu-Mir-279-o44 Pdu-Mir-279-o45 Pdu-Mir-279-o46 Pdu-Mir-279-o47 Pve-Mir-279 Rph-Mir-279 Sme-Mir-279-P19 Sme-Mir-279-P20 Sne-Mir-279 Snu-Mir-279-o50 Snu-Mir-279-o51 Snu-Mir-279-o52 Tca-Mir-279-o3 Tca-Mir-279-P1c Tca-Mir-279-P1d Tca-Mir-279-P2 Tca-Mir-279-P3 Tur-Mir-279-P26 Tur-Mir-279-P27a Tur-Mir-279-P27b War-Mir-279-P14 War-Mir-279-P15 War-Mir-279-P16

Node of Origin (locus)

Protostomia

Node of Origin (family)

Protostomia

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601624.3: 84593791-84593886 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUAAUCAUCACAUAUAUAUAUGUAUAUGGCUGUGGGUCUCUUUCUUGUCCAUGGUAUAGUAGUUGAAGCUCACUGCUUUAGUGUGCAUCCUCUUUACAUCACAUGACUAGAAAGUGCACUCACUUCCAUCUCAGUACAGAACAUCUUAUCAAAAUG

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Structure

        10        20            30         40        50        60        70       
UUAAUCAUCACAUAUAUAUA     ----    CU      CU-|     U   CAUGGUAUAGUAGUUGAAGCUCACUGC 
                    UGUAU    AUGG  GUGGGU   CUUUCU GUC                           \
                    ACAUG    UACC  CACUCA   GAAAGA CAG                           U
GUAAAACUAUUCUACAAG--     ACUC    UU      CGU^     U   UACACUACAUUUCUCCUACGUGUGAUU 
    150       140         130       120       110       100        90        80

Deep sequencing

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3' NTU

No

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ad	Ce	Ce	Ce	Eg	Eg	Eg	Eg	Eg	Eg	Mi	Mi	Sc	Sc	Sc	Sm	Sm	Sp	Sp	Sp

Star sequence

Sma-Mir-279_5p*

mirBase accession

Sequence

0- UGUGGGUCUCUUUCUUGUCCAU -22

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Mature sequence

Sma-Mir-279_3p

mirBase accession

Sequence

73- UGACUAGAAAGUGCACUCACUUC -96

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