MirGeneDB ID | Aae-Mir-279-P25 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Yellow fever mosquito (Aedes aegypti) |
MiRBase ID |
aae-mir-2945
|
Paralogues |
Aae-Mir-279-P1a
Aae-Mir-279-P1b1
Aae-Mir-279-P1b2
Aae-Mir-279-P2
Aae-Mir-279-P3
|
Orthologues |
Aga-Mir-279-P25
Agr-Mir-279
Asu-Mir-279-o25
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
Node of Origin (locus) |
Culicidae
|
Node of Origin (family) |
Protostomia
|
Genome context (Aaeg_L3) |
supercont1.43: 958696-958759 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUUUCGUUUUAUUAUGAUUUUCUGAUCUGAGCGGGUCCGUUUCUAGUGUCAUGUGCUGUAUUCGAAUAUCAUGACUAGAGGCAGACUCGUUUAGGUCUGGGAUCGUUGUCUUCAGUUUGCUUA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AGUUUCGUUUUAUUAUGAU--|UU U C GU UGCUGUA
U C GAUCUGAGCGGGUC GUUUCUA GUCAUG U
A G CUGGAUUUGCUCAG CGGAGAU CAGUAC U
AUUCGUUUGACUUCUGUUGCU^GG U A -- UAUAAGC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Aae-Mir-279-P25_5p* |
mirBase accession | MIMAT0014315 |
Sequence |
0- AGCGGGUCCGUUUCUAGUGUCAUG -24
Get sequence
|
Mature sequence |
Aae-Mir-279-P25_3p |
mirBase accession | MIMAT0014316 |
Sequence |
42- UGACUAGAGGCAGACUCGUUUA -64
Get sequence
|