MirGeneDB 3.0
MirGeneDB ID

Aae-Mir-279-P1a

Family name MIR-279 (all species)
Seed GACUAGA
Species Yellow fever mosquito (Aedes aegypti)
MiRBase ID aae-mir-286a
Paralogues Aae-Mir-279-P1b1  Aae-Mir-279-P1b2  Aae-Mir-279-P2  Aae-Mir-279-P3  Aae-Mir-279-P25 
Orthologues Aga-Mir-279-P1a  Agr-Mir-279  Bko-Mir-279-o1  Bpl-Mir-279  Dan-Mir-279-P1  Dlo-Mir-279-P1  Dme-Mir-279-P1  Dmo-Mir-279-P1  Dsi-Mir-279-P1  Dya-Mir-279-P1  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P1  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o1  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Culicidae
Node of Origin (family) Protostomia
Genome context
(Aaeg_L3)		 supercont1.464: 825007-825079 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P1a)		 Mir-279-P1a supercont1.464: 825007-825079 [+] Ensembl
Mir-3-o2 supercont1.464: 825634-825696 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGGACUAAACACUUGGGAAUCGUUAUUUGGGGCGAUUGUCGGACUAGUCGCUGCGUACAAAACGGAACUAUUUCAACUAGUGACUAGACCGAACACUCGCGUCCUAAAGCACGAUCAGUUCAACGUUGGAGCG
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Structure
        10        20        30           40        50        60     
CGGACUAAACACUUGGGA     UA         AU--  -|   A         GCGUACAAAACG 
                  AUCGU  UUUGGGGCG    UG UCGG CUAGUCGCU            G
                  UAGCA  AAAUCCUGC    AC AGCC GAUCAGUGA            A
GCGAGGUUGCAACUUGAC     CG         GCUC  A^   A         UCAACUUUAUCA 
 130       120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Star sequence

Aae-Mir-279-P1a_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGCGAUUGUCGGACUAGUCGCU -22
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Mature sequence

Aae-Mir-279-P1a_3p
mirBase accessionMIMAT0014314
Sequence 
50- UGACUAGACCGAACACUCGCGUC -73
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