Mir-279-P1

MirGeneDB ID

Dme-Mir-279-P1

Family name

MIR-279 (all species)

Seed

GACUAGA

Species

Fruit fly (Drosophila melanogaster)

MiRBase ID

dme-mir-286

Paralogues

Dme-Mir-279-P2 Dme-Mir-279-P3

Orthologues

Aae-Mir-279-P1a Aae-Mir-279-P1b1 Aae-Mir-279-P1b2 Aga-Mir-279-P1a Aga-Mir-279-P1b Agr-Mir-279 Bko-Mir-279-o1 Bpl-Mir-279 Dan-Mir-279-P1 Dlo-Mir-279-P1 Dma-Mir-279-P1c Dma-Mir-279-P1d Dmo-Mir-279-P1 Dpu-Mir-279-P1c Dpu-Mir-279-P1d Dsi-Mir-279-P1 Dya-Mir-279-P1 Eba-Mir-279 Egr-Mir-279 Esc-Mir-279 Gpa-Mir-279-P1 Gsa-Mir-279 Gsp-Mir-279 Hme-Mir-279-o1 Hru-Mir-279 Isc-Mir-279 Lgi-Mir-279 Lhy-Mir-279 Llo-Mir-279 Mgi-Mir-279 Mom-Mir-279 Npo-Mir-279 Obi-Mir-279 Ovu-Mir-279 Pau-Mir-279 Pcr-Mir-279 Pve-Mir-279 Rph-Mir-279 Sma-Mir-279 Sne-Mir-279 Tca-Mir-279-P1c Tca-Mir-279-P1d

Node of Origin (locus)

Pancrustacea

Node of Origin (family)

Protostomia

Genome context
(Drosophila_melanogaster_BDGP6)

2R: 19661435-19661509 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-279-P1)

Mir-4983 2R: 19637431-19637502 [+] UCSC Ensembl
Mir-2-P6c 2R: 19660722-19660787 [-] UCSC Ensembl
Mir-2-P6b 2R: 19660874-19660935 [-] UCSC Ensembl
Mir-2-P6a 2R: 19661012-19661074 [-] UCSC Ensembl
Mir-2-P5 2R: 19661162-19661222 [-] UCSC Ensembl
Mir-9-P9 2R: 19661300-19661356 [-] UCSC Ensembl
Mir-279-P1 2R: 19661435-19661509 [-] UCSC Ensembl
Mir-3-P2 2R: 19661600-19661656 [-] UCSC Ensembl
Mir-3-P1 2R: 19661710-19661768 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUAUUGGGCACUCCAGUUUUAAAAUUGAAUGGCGAAUGUCGGUAUGGUCUCUUUUUCAAAGAAAGGUUUCGAUUAAGCGAAGUGACUAGACCGAACACUCGUGCUAUAAUUUUAAAAUAUUCAACAUGCUCAGUA

Get precursor sequence

Structure

        10          20        30         40        50        60      
AUAUUGGGCACUCCAGU--          AAUG    A  -|    A     U  UUUUCAAAGAAAG 
                   UUUAAAAUUG    GCGA UG UCGGU UGGUC CU             G
                   AAAUUUUAAU    UGCU AC AGCCA AUCAG GA             U
AUGACUCGUACAACUUAUA          AUCG    C  A^    G     U  AGCGAAUUAGCUU 
   130       120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	He	He	La	Ov	Sa	Wh

Star sequence

Dme-Mir-279-P1_5p*

mirBase accession

MIMAT0020820

Sequence

0- GGCGAAUGUCGGUAUGGUCUCU -22

Get sequence

Mature sequence

Dme-Mir-279-P1_3p

mirBase accession

MIMAT0000359

Sequence

52- UGACUAGACCGAACACUCGUGCU -75

Get sequence

Proposed targets

microrna.org: MIMAT0000359
TargetScanFly: dme-miR-286