MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-279-o1

Family name MIR-279 (all species)
Seed GACUAGA
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-279a
Paralogues Hme-Mir-279-o2  Hme-Mir-279-P2  Hme-Mir-279-P3 
Orthologues Aae-Mir-279-P1a  Aae-Mir-279-P1b1  Aae-Mir-279-P1b2  Aga-Mir-279-P1a  Aga-Mir-279-P1b  Agr-Mir-279  Bko-Mir-279-o1  Bpl-Mir-279  Dan-Mir-279-P1  Dlo-Mir-279-P1  Dma-Mir-279-P1c  Dma-Mir-279-P1d  Dme-Mir-279-P1  Dmo-Mir-279-P1  Dpu-Mir-279-P1c  Dpu-Mir-279-P1d  Dsi-Mir-279-P1  Dya-Mir-279-P1  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P1  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P1c  Tca-Mir-279-P1d 
Node of Origin (locus) H. melpomene
Node of Origin (family) Protostomia
Genome context
(Hmel_1)		 HE668381: 19337-19392 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCGGCCGCCGCCAAAGGUCAAUUUCUUUCGAUGAGUGGAGGUUUAGUGCAUGUUUCCACAUCAUGACUAGAUCCACACUCAUCCAUGGAAGUUGCGAUGUUCGUCGAGGCCACAA
Get precursor sequence
Structure
        10           20        30        40        50        
UGCGGCCGCCGCCAAAG---|U        UUC        GA        G    UUUC 
                    G CAAUUUCU   GAUGAGUG  GGUUUAGU CAUG    \
                    C GUUGAAGG   CUACUCAC  CUAGAUCA GUAC    C
AACACCGGAGCUGCUUGUAG^-        UAC        AC        -    UACA 
    110       100         90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-279-o1_5p*
mirBase accessionNone
Sequence 
0- GAUGAGUGGAGGUUUAGUGCAUG -23
Get sequence
Mature sequence

Hme-Mir-279-o1_3p
mirBase accessionMIMAT0024961
Sequence 
34- UGACUAGAUCCACACUCAUCCA -56
Get sequence