MirGeneDB ID | Hme-Mir-279-o2 |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Longwing butterfly (Heliconius melpomene) |
MiRBase ID |
hme-mir-279c
|
Paralogues |
Hme-Mir-279-o1
Hme-Mir-279-P2
Hme-Mir-279-P3
|
Orthologues |
Aae-Mir-279-P2
Aga-Mir-279-P2
Agr-Mir-279
Bge-Mir-279-P2
Bko-Mir-279-o2
Bpl-Mir-279
Dan-Mir-279-P2
Dlo-Mir-279-P2
Dma-Mir-279-P2
Dme-Mir-279-P2
Dmo-Mir-279-P2
Dpu-Mir-279-P2
Dsi-Mir-279-P2
Dya-Mir-279-P2
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gpa-Mir-279-P2
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
Tca-Mir-279-P2
|
Node of Origin (locus) |
H. melpomene
|
Node of Origin (family) |
Protostomia
|
Genome context (Hmel_1) |
HE671887: 111974-112030 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUGCAUGAGUGUGAGUGACAGCUUCGGAAGAUGGGUGAAUUUCUAGUGUCAAGUUACGGAACCUUGACUAGAUUUUCACUUAUCCUUUGCGGCUGUCUUUACCUGCUUUUUUGUUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUGCAUGAGUGUGAGU--| U A UU GU UUAC
GACAGCU CGGA GAUGGGUGAA UCUA GUCAAG \
CUGUCGG GUUU CUAUUCACUU AGAU CAGUUC G
GUUGUUUUUUCGUCCAUUU^ C C UU -- CAAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Hme-Mir-279-o2_5p* |
mirBase accession | None |
Sequence |
0- GAUGGGUGAAUUUCUAGUGUCAAG -24
Get sequence
|
Mature sequence |
Hme-Mir-279-o2_3p |
mirBase accession | MIMAT0024966 |
Sequence |
35- UGACUAGAUUUUCACUUAUCCU -57
Get sequence
|