MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-279-P3

Family name MIR-279 (all species)
Seed GACUAGA
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-279d
Paralogues Hme-Mir-279-o1  Hme-Mir-279-o2  Hme-Mir-279-P2 
Orthologues Aae-Mir-279-P3  Aga-Mir-279-P3  Agr-Mir-279  Bge-Mir-279-P3  Bpl-Mir-279  Dan-Mir-279-P3  Dlo-Mir-279-P3  Dma-Mir-279-P3  Dme-Mir-279-P3  Dmo-Mir-279-P3  Dpu-Mir-279-P3  Dsi-Mir-279-P3  Dya-Mir-279-P3  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P3  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-o3  Tca-Mir-279-P3 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Hmel_1)		 HE670979: 4652-4714 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P3)		 Mir-279-P3 HE670979: 4652-4714 [-] Ensembl
Mir-279-P2 HE670979: 5122-5178 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAUGGGUAGAUUUGACUUGAUGAUCUUUGUGGGCGAGUUUGCUUCUGGUUCAUGUCAAAUUAACAUCAUGACUAGAUCCAUACUCGUCUGCAGCCAUCAACUCAAUCAACAUUAAUUAAAUA
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Structure
        10             20        30        40        50        60 
CAAUGGGUAGAUUUGAC-----|     AUCU   UG       U  CU      U    UCAAA 
                      UUGAUG    UUG  GGCGAGU UG  UCUGGU CAUG     U
                      AACUAC    GAC  CUGCUCA AC  AGAUCA GUAC     U
AUAAAUUAAUUACAACUAACUC^     C---   GU       U  CU      -    UACAA 
 120       110       100           90        80         70
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU No
MotifsNo
Tissue expression
-   +
Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-279-P3_5p*
mirBase accessionNone
Sequence 
0- UGGGCGAGUUUGCUUCUGGUUCAUG -25
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Mature sequence

Hme-Mir-279-P3_3p
mirBase accessionMIMAT0024965
Sequence 
39- UGACUAGAUCCAUACUCGUCUGCA -63
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