MirGeneDB ID | Dma-Mir-279-P3 |
Family name |
MIR-279 (all species) |
Seed |
GUGGGUC |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
|
Paralogues |
Dma-Mir-279-o8
Dma-Mir-279-o9
Dma-Mir-279-P1c
Dma-Mir-279-P1d
Dma-Mir-279-P2
|
Orthologues |
Aae-Mir-279-P3
Aga-Mir-279-P3
Agr-Mir-279
Bge-Mir-279-P3
Bpl-Mir-279
Dan-Mir-279-P3
Dlo-Mir-279-P3
Dme-Mir-279-P3
Dmo-Mir-279-P3
Dpu-Mir-279-P3
Dsi-Mir-279-P3
Dya-Mir-279-P3
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gpa-Mir-279-P3
Gsa-Mir-279
Gsp-Mir-279
Hme-Mir-279-P3
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
Tca-Mir-279-o3
Tca-Mir-279-P3
|
Node of Origin (locus) |
Pancrustacea
|
Node of Origin (family) |
Protostomia
|
Genome context (DMA_ASM399081) |
NC_046174.1: 9091763-9091828 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUUCCAACAGCUAGGGUUGGGCGCUCUCUAGGUGGGUCUGUUUCUAGUGCAUGUGUUUUCUGCCUGUUUGUUCAUGACUAGAUCCAUACUCAUCUAAAGGGACCCAAUCGUUCUACAUUAGUAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUUCCAACAGCUAGGGU---| CG C C UU G UGUUUUCUG
UGGG CUCU UAGGUGGGU UG UCUAGU CAUG \
ACCC GGGA AUCUACUCA AC AGAUCA GUAC C
AAAAUGAUUACAUCUUGCUA^ A- A U CU - UUGUUUGUC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
01 |
02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
13 |
14 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Dma-Mir-279-P3_5p |
mirBase accession | None |
Sequence |
0- GGUGGGUCUGUUUCUAGUGCAUG -23
Get sequence
|
Co-mature sequence |
Dma-Mir-279-P3_3p |
mirBase accession | None |
Sequence |
44- UGACUAGAUCCAUACUCAUCUA -66
Get sequence
|