MirGeneDB 3.0
MirGeneDB ID

Dma-Mir-279-P1c

Family name MIR-279 (all species)
Seed GACUAGA
Species Large common water flea (Daphnia magna)
MiRBase ID
Paralogues Dma-Mir-279-o8  Dma-Mir-279-o9  Dma-Mir-279-P1d  Dma-Mir-279-P2  Dma-Mir-279-P3 
Orthologues Agr-Mir-279  Bko-Mir-279-o1  Bpl-Mir-279  Dan-Mir-279-P1  Dlo-Mir-279-P1  Dme-Mir-279-P1  Dmo-Mir-279-P1  Dpu-Mir-279-P1c  Dsi-Mir-279-P1  Dya-Mir-279-P1  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P1  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o1  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P1c 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(DMA_ASM399081)		 NC_046175.1: 6287015-6287090 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUCAGUCCACAUCUAUGGUGGAUUUCGUUGAUGAGUGAGGAUCGUUAGUCGCGUUGAAAACGUUCCUCAAGUUAAGAGUUCGUGACUAGAUCUGACACUCGUCCACGACGUUGACUCUGUACAUCAGUGAUUUGC
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Structure
        10          20        30         40        50        60        
UUUCAGUCCACAUCUAU--   G   U    U        A-|    GU        UUGAAAACGUUCC 
                   GGU GAU UCGU GAUGAGUG  GGAUC  UAGUCGCG             \
                   UCA UUG AGCA CUGCUCAC  UCUAG  AUCAGUGC             U
CGUUUAGUGACUACAUGUC   G   C    C        AG^    --        UUGAGAAUUGAAC 
    130       120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
01 02 03 04 05 06 07 08 09 10 11 12 13 14
Star sequence

Dma-Mir-279-P1c_5p*
mirBase accessionNone
Sequence 
0- GAUGAGUGAGGAUCGUUAGUCGCG -24
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Mature sequence

Dma-Mir-279-P1c_3p
mirBase accessionNone
Sequence 
53- UGACUAGAUCUGACACUCGUCCA -76
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