MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-279-P1c

Family name MIR-279 (all species)
Seed GACUAGA
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-279-o8  Dpu-Mir-279-o9  Dpu-Mir-279-P1d  Dpu-Mir-279-P2  Dpu-Mir-279-P3 
Orthologues Agr-Mir-279  Bko-Mir-279-o1  Bpl-Mir-279  Dan-Mir-279-P1  Dlo-Mir-279-P1  Dma-Mir-279-P1c  Dme-Mir-279-P1  Dmo-Mir-279-P1  Dsi-Mir-279-P1  Dya-Mir-279-P1  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P1  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o1  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P1c 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_32: 69703-69769 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P1c)		 Mir-965 DAPPUscaffold_32: 27782-27843 [-] Ensembl
Mir-279-P1d DAPPUscaffold_32: 68663-68726 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AGUCGACUCAAAACUCGGUCGGAUUUCGUCGAUGAGUGGGGAUCGUUAGUCGCGUUGAAAUUUCCUCAUGUUCGUGACUAGAUCUGACACUCGUCCACGACGUCAACCAAAAAUCACCCCAUGUGAG
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Structure
        10        20          30         40        50        60   
AGUCGACUCAAAACUCGGUCG--   U    C        G-|    GU        UUGAAAUU 
                       GAU UCGU GAUGAGUG  GGAUC  UAGUCGCG        U
                       CUG AGCA CUGCUCAC  UCUAG  AUCAGUGC        C
GAGUGUACCCCACUAAAAACCAA   C    C        AG^    --        UUGUACUC 
     120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Dpu-Mir-279-P1c_5p* (predicted)
mirBase accessionNone
Sequence 
0- GAUGAGUGGGGAUCGUUAGUCGCG -24
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Mature sequence

Dpu-Mir-279-P1c_3p
mirBase accessionNone
Sequence 
44- UGACUAGAUCUGACACUCGUCCA -67
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