MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-279-o8

Family name MIR-279 (all species)
Seed GACUAGA
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-279-o9  Dpu-Mir-279-P1c  Dpu-Mir-279-P1d  Dpu-Mir-279-P2  Dpu-Mir-279-P3 
Orthologues Agr-Mir-279  Bpl-Mir-279  Dma-Mir-279-o8  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Lpo-Mir-279-P8  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_62: 283702-283760 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CAUAUGUUUAACUGUAUGUCCUCAGUACUGAGUGAGUGUUGGUCUAGAACACAGUGAUAUAAUUUGUGACUAGAUUUUUACACUCACCAAGUAAGGUGGAAGAUAACGUCGUUAAGCCU
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Structure
        10         20        30        40          50         
CAUAUGUUUAACUGUAUG-   UCAG    GA        U--|      AA    GUGAU 
                   UCC    UACU  GUGAGUGU   GGUCUAG  CACA     \
                   AGG    AUGA  CACUCACA   UUAGAUC  GUGU     A
UCCGAAUUGCUGCAAUAGA   UGGA    AC        UUU^      A-    UUAAU 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Star sequence

Dpu-Mir-279-o8_5p*
mirBase accessionNone
Sequence 
0- AGUGAGUGUUGGUCUAGAACACA -23
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Mature sequence

Dpu-Mir-279-o8_3p
mirBase accessionNone
Sequence 
36- UGACUAGAUUUUUACACUCACCA -59
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