MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-279-o9

Family name MIR-279 (all species)
Seed GACUAGA
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-279-o8  Dpu-Mir-279-P1c  Dpu-Mir-279-P1d  Dpu-Mir-279-P2  Dpu-Mir-279-P3 
Orthologues Agr-Mir-279  Bpl-Mir-279  Csc-Mir-279-P9a  Csc-Mir-279-P9b  Dma-Mir-279-o9  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) Daphnia
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_63: 523653-523745 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUCUUCAAGUCUCGCCACCACUUGUUGCCGGGUGAUUGUGUGUCUGGUCCAUGUUAACUUGAUUUGGCGACCGAACUGAAAAUUGUUGGUUGAUAAUUUCAUGACUAGAUCCACACUCAUCCAGUGACACAGUUGGUAAUUCGUCCGCUUUUC
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Structure
        10         20         30        40        50        60        70      
CUCUUCAAGUCUCGCCACC-   -|  UG C      U    UG       C   UUAACUUGAUUUGGCGACCGAA 
                    ACU UGU  C GGGUGA UGUG  UCUGGUC AUG                      C
                    UGA ACA  G CCUACU ACAC  AGAUCAG UAC                      U
CUUUUCGCCUGCUUAAUGGU   C^  GU A      C    CU       -   UUUAAUAGUUGGUUGUUAAAAG 
 150       140       130       120       110        100        90        80
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
To
Star sequence

Dpu-Mir-279-o9_5p*
mirBase accessionNone
Sequence 
0- GGUGAUUGUGUGUCUGGUCCAUG -23
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Mature sequence

Dpu-Mir-279-o9_3p
mirBase accessionNone
Sequence 
71- UGACUAGAUCCACACUCAUCCA -93
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