MirGeneDB 3.0
MirGeneDB ID

Dpu-Mir-279-P2

Family name MIR-279 (all species)
Seed GACUAGA
Species Common water flea (Daphnia pulex)
MiRBase ID
Paralogues Dpu-Mir-279-o8  Dpu-Mir-279-o9  Dpu-Mir-279-P1c  Dpu-Mir-279-P1d  Dpu-Mir-279-P3 
Orthologues Aae-Mir-279-P2  Aga-Mir-279-P2  Agr-Mir-279  Bge-Mir-279-P2  Bko-Mir-279-o2  Bpl-Mir-279  Dan-Mir-279-P2  Dlo-Mir-279-P2  Dma-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P2  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o2  Hme-Mir-279-P2  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P2 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Daphnia_pulex.V1.0)		 DAPPUscaffold_43: 177095-177172 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGCUUUAUUCAACAAUCCAGUCGCGUUCGGUGGAUAUGGUUCUCGUGACAUGGCUUUUCAUCGGCUUUGUAUUCCGAGCGUACAUGACUAGAUCCAUACUCACCAGACGAGGCUGGACCAAUCAUCGAAAGCUCUU
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Structure
        10          20        30        40        50        60         
UUUGCUUUAUUCAACAA--|      G   UC    GA     U   C  GA    GCUUUUCAUCGGCU 
                   UCCAGUC CGU  GGUG  UAUGG UCU GU  CAUG              U
                   AGGUCGG GCA  CCAC  AUACC AGA CA  GUAC              U
UUCUCGAAAGCUACUAACC^      A   GA    UC     U   U  --    AUGCGAGCCUUAUG 
      130       120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Dpu-Mir-279-P2_5p*
mirBase accessionNone
Sequence 
0- GGUGGAUAUGGUUCUCGUGACAUG -24
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Mature sequence

Dpu-Mir-279-P2_3p
mirBase accessionNone
Sequence 
56- UGACUAGAUCCAUACUCACCAG -78
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