MirGeneDB 3.0
MirGeneDB ID

Hme-Mir-279-P2

Family name MIR-279 (all species)
Seed GACUAGA
Species Longwing butterfly (Heliconius melpomene)
MiRBase ID hme-mir-279b
Paralogues Hme-Mir-279-o1  Hme-Mir-279-o2  Hme-Mir-279-P3 
Orthologues Aae-Mir-279-P2  Aga-Mir-279-P2  Agr-Mir-279  Bge-Mir-279-P2  Bko-Mir-279-o2  Bpl-Mir-279  Dan-Mir-279-P2  Dlo-Mir-279-P2  Dma-Mir-279-P2  Dme-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-P2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P2  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P2 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Hmel_1)		 HE670979: 5122-5178 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P2)		 Mir-279-P3 HE670979: 4652-4714 [-] Ensembl
Mir-279-P2 HE670979: 5122-5178 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAUAAUUGGAAAAAUUUUGCAAUCAGUUAAUGGGUAUAAGUCUAGUGUCACAGUGUGCAUUUGUGACUAGAUCUACACUCAUUGAUUGCUUGCAAACAAAUCUUCAAGAAGAAUU
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Structure
        10          20        30        40        50         
AAGAUAAUUGGAAAAAU--|      U            A  AG    GU      GUGU 
                   UUUGCAA CAGUUAAUGGGU UA  UCUA  GUCACA    \
                   AAACGUU GUUAGUUACUCA AU  AGAU  CAGUGU    G
UUAAGAAGAACUUCUAAAC^      C            C  CU    --      UUAC 
     110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Fe Fe Fe Fe Ma Ma
Star sequence

Hme-Mir-279-P2_5p*
mirBase accessionNone
Sequence 
0- AAUGGGUAUAAGUCUAGUGUCACA -24
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Mature sequence

Hme-Mir-279-P2_3p
mirBase accessionMIMAT0024964
Sequence 
35- UGACUAGAUCUACACUCAUUGA -57
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