MirGeneDB 3.0

MirGeneDB ID

Dme-Mir-279-P2

Family name MIR-279 (all species)
Seed GACUAGA
Species Fruit fly (Drosophila melanogaster)
MiRBase ID dme-mir-279
Paralogues Dme-Mir-279-P1  Dme-Mir-279-P3 
Orthologues Aae-Mir-279-P2  Aga-Mir-279-P2  Agr-Mir-279  Bge-Mir-279-P2  Bko-Mir-279-o2  Bpl-Mir-279  Dan-Mir-279-P2  Dlo-Mir-279-P2  Dma-Mir-279-P2  Dmo-Mir-279-P2  Dpu-Mir-279-P2  Dsi-Mir-279-P2  Dya-Mir-279-P2  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P2  Gsa-Mir-279  Gsp-Mir-279  Hme-Mir-279-o2  Hme-Mir-279-P2  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279  Tca-Mir-279-P2 
Node of Origin (locus) Pancrustacea
Node of Origin (family) Protostomia
Genome context
(Drosophila_melanogaster_BDGP6)
3R: 29215606-29215672 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-279-P2)
Mir-279-P2 3R: 29215606-29215672 [+] UCSC Ensembl
Mir-279-P3 3R: 29217202-29217265 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUGGAAUUGGAAUUCAUACUACUGUUUUUAGUGGGUGGGGGUCCAGUGUUUCACAUUGAUUUUCUUAGUAUUUGUGACUAGAUCCACACUCAUUAAUAACGGUAGUUCAAUCAUCAAGCACGUGUU
Get precursor sequence
Structure
        10          20        30        40        50        60     
GCUGGAAUUGGAAUUCAU--|        U          G     C  UGUU     UUGAUUUU 
                    ACUACUGUU UUAGUGGGUG GGGUC AG    UCACA        \
                    UGAUGGCAA AAUUACUCAC CCUAG UC    AGUGU        C
UUGUGCACGAACUACUAACU^        U          A     A  ----     UUAUGAUU 
     120       110       100        90        80            70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo He He La Ov Sa Wh
Star sequence

Dme-Mir-279-P2_5p*

mirBase accessionMIMAT0020807
Sequence
0- AGUGGGUGGGGGUCCAGUGUUUCACA -26
Get sequence
Mature sequence

Dme-Mir-279-P2_3p

mirBase accessionMIMAT0000341
Sequence
45- UGACUAGAUCCACACUCAUUAA -67
Get sequence
Proposed targets microrna.org: MIMAT0000341
TargetScanFly: dme-miR-279