MirGeneDB 3.0

MirGeneDB ID

Gsp-Mir-279

Family name MIR-279 (all species)
Seed GACUAGA
Species Montseny horsehair worm (Gordionus sp.)
MiRBase ID
Paralogues
Orthologues Aae-Mir-279-P1a  Aae-Mir-279-P1b1  Aae-Mir-279-P1b2  Aae-Mir-279-P2  Aae-Mir-279-P3  Aae-Mir-279-P25  Aga-Mir-279-P1a  Aga-Mir-279-P1b  Aga-Mir-279-P2  Aga-Mir-279-P3  Aga-Mir-279-P25  Agr-Mir-279  Asu-Mir-279-o22  Asu-Mir-279-o23  Asu-Mir-279-o24  Asu-Mir-279-o25  Asu-Mir-279-o26  Ava-Mir-279-P21a  Ava-Mir-279-P21b  Ava-Mir-279-P22a  Ava-Mir-279-P22b  Ava-Mir-279-P23a  Ava-Mir-279-P23b  Ava-Mir-279-P24a  Ava-Mir-279-P24b  Bge-Mir-279-o5  Bge-Mir-279-o6  Bge-Mir-279-o7  Bge-Mir-279-P2  Bge-Mir-279-P3  Bko-Mir-279-o1  Bko-Mir-279-o2  Bpl-Mir-279  Cbr-Mir-279-P10  Cbr-Mir-279-P11a  Cbr-Mir-279-P11b  Cbr-Mir-279-P12  Cbr-Mir-279-P13  Cel-Mir-279-P10  Cel-Mir-279-P11  Cel-Mir-279-P12  Cel-Mir-279-P13  Csc-Mir-279-P9a  Csc-Mir-279-P9b  Cte-Mir-279-o34  Cte-Mir-279-o35  Cte-Mir-279-o36  Dan-Mir-279-P1  Dan-Mir-279-P2  Dan-Mir-279-P3  Dgr-Mir-279-o48  Dgr-Mir-279-o49  Dlo-Mir-279-o4  Dlo-Mir-279-P1  Dlo-Mir-279-P2  Dlo-Mir-279-P3  Dma-Mir-279-o8  Dma-Mir-279-o9  Dma-Mir-279-P1c  Dma-Mir-279-P1d  Dma-Mir-279-P2  Dma-Mir-279-P3  Dme-Mir-279-P1  Dme-Mir-279-P2  Dme-Mir-279-P3  Dmo-Mir-279-P1  Dmo-Mir-279-P2  Dmo-Mir-279-P3  Dpu-Mir-279-o8  Dpu-Mir-279-o9  Dpu-Mir-279-P1c  Dpu-Mir-279-P1d  Dpu-Mir-279-P2  Dpu-Mir-279-P3  Dsi-Mir-279-P1  Dsi-Mir-279-P2  Dsi-Mir-279-P3  Dya-Mir-279-P1  Dya-Mir-279-P2  Dya-Mir-279-P3  Eba-Mir-279  Efe-Mir-279-o37  Efe-Mir-279-o38  Efe-Mir-279-o39  Efe-Mir-279-o40  Efe-Mir-279-o41  Efe-Mir-279-o42  Efe-Mir-279-o43  Egr-Mir-279  Esc-Mir-279  Gpa-Mir-279-P1  Gpa-Mir-279-P2  Gpa-Mir-279-P3  Gsa-Mir-279  Hme-Mir-279-o1  Hme-Mir-279-o2  Hme-Mir-279-P2  Hme-Mir-279-P3  Hru-Mir-279  Isc-Mir-279  Lan-Mir-279-P17  Lan-Mir-279-P18  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Lpo-Mir-279-P4  Lpo-Mir-279-P5  Lpo-Mir-279-P6  Lpo-Mir-279-P7  Lpo-Mir-279-P8  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ofu-Mir-279-o53  Ofu-Mir-279-o54  Ofu-Mir-279-o55  Ofu-Mir-279-o56  Ofu-Mir-279-o57  Ovu-Mir-279  Pau-Mir-279  Pca-Mir-279-o27  Pca-Mir-279-o28  Pca-Mir-279-o29  Pca-Mir-279-o30  Pca-Mir-279-o31  Pca-Mir-279-o32  Pca-Mir-279-o33  Pcr-Mir-279  Pdu-Mir-279-o44  Pdu-Mir-279-o45  Pdu-Mir-279-o46  Pdu-Mir-279-o47  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sme-Mir-279-P19  Sme-Mir-279-P20  Sne-Mir-279  Snu-Mir-279-o50  Snu-Mir-279-o51  Snu-Mir-279-o52  Tca-Mir-279-o3  Tca-Mir-279-P1c  Tca-Mir-279-P1d  Tca-Mir-279-P2  Tca-Mir-279-P3  Tur-Mir-279-P26  Tur-Mir-279-P27a  Tur-Mir-279-P27b  War-Mir-279-P14  War-Mir-279-P15  War-Mir-279-P16 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(GCA_954871325.1_tfGorGonz1-WG_genomic)
OX940786.1: 10640023-10640092 [+]
Precursor
(pre-Mir +30nt flank)
CUCCAACUACAAAUACAGAGUUCUAUGAGUGAUGUUUGUGUUUCUAGUGCCAUGUGUAAUAUUAAAAAGAAAUAAUCAUGACUAGAUCCACACUCAUCCCUUAUGGGAUCUCGAUAAUAUUUUCUUCUUU
Get precursor sequence
Structure
        10         20         30        40        50        60     
CUCCAACUACAAAUACA-   -|        U    UU    UU      GC    UGUAAUAUUA 
                  GAG UUCUAUGAG GAUG  UGUG  UCUAGU  CAUG          A
                  CUC AGGGUAUUC CUAC  ACAC  AGAUCA  GUAC          A
UUUCUUCUUUUAUAAUAG   U^        C    UC    CU      --    UAAUAAAGAA 
.       120       110       100        90          80        70
Deep sequencing
Go to detailed chart
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of ecdysozoans and how the priapulid Mir-279s relate to the Mir-279s in nematodes or arthropods and thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Wh Wh
Star sequence

Gsp-Mir-279_5p*

mirBase accessionNone
Sequence
0- GAUGUUUGUGUUUCUAGUGCCAUG -24
Get sequence
Mature sequence

Gsp-Mir-279_3p

mirBase accessionNone
Sequence
48- UGACUAGAUCCACACUCAUCCC -70
Get sequence