MirGeneDB ID | Ava-Mir-279-P23b |
Family name |
MIR-279 (all species) |
Seed |
GACUAGA |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
|
Paralogues |
Ava-Mir-279-P21a
Ava-Mir-279-P21b
Ava-Mir-279-P22a
Ava-Mir-279-P22b
Ava-Mir-279-P23a
Ava-Mir-279-P24a
Ava-Mir-279-P24b
|
Orthologues |
Agr-Mir-279
Asu-Mir-279-o23
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
Protostomia
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075493.1: 3375668-3375727 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UAUUUACAUUUUCACCGGUUAUCAUCACUGAGCGCGAAUGUUCGCAGUCAAUUAGUAGAUUUAUAUUAUUGACUAGAGCACUUCGUGCUUUGGGAAAUCCGGUUUCGACGUUUAUCGAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UAUUUACAUUUUCACCGGUUAUCA- ACU -| GC UAGUAGA
UC GAGCGCGAA UGUUC AGUCAAU \
AG UUCGUGCUU ACGAG UCAGUUA U
UAAGCUAUUUGCAGCUUUGGCCUAA GGU C^ A- UUAUAUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ava-Mir-279-P23b_5p* |
mirBase accession | None |
Sequence |
0- AGCGCGAAUGUUCGCAGUCAAU -22
Get sequence
|
Mature sequence |
Ava-Mir-279-P23b_3p |
mirBase accession | None |
Sequence |
39- UGACUAGAGCACUUCGUGCUU -60
Get sequence
|