| MirGeneDB ID | Ava-Mir-279-P22a |
|---|
| Family name |
MIR-279 (all species) |
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| Seed |
GACUAGA |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-279-P21a
Ava-Mir-279-P21b
Ava-Mir-279-P22b
Ava-Mir-279-P23a
Ava-Mir-279-P23b
Ava-Mir-279-P24a
Ava-Mir-279-P24b
|
|---|
| Orthologues |
Agr-Mir-279
Asu-Mir-279-o22
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
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| Node of Origin (locus) |
A. vaga
|
|---|
| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 9643694-9643755 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UAGUUUAUGUGUUAUAUUAACUUGUUACAUCAGUCCAUCAUCUUUUAGUCACUUUCGAUAUAUUGAUUAGUGACUAGAGGUUUUGCACUGUUGAAAUUAGUUCAUUAUCCGUCGUUGUCGUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UAGUUUAUGUGUUAUAUU--| U A U C UCAU UUCGAUA
AACU GUU CA CAGU CA CUUUUAGUCACU \
UUGA UAA GU GUCA GU GGAGAUCAGUGA U
AUGCUGUUGCUGCCUAUUAC^ U A U C UUU- UUAGUUA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Ava-Mir-279-P22a_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUCCAUCAUCUUUUAGUCACU -23
Get sequence
|
|---|
| Mature sequence |
Ava-Mir-279-P22a_3p |
| mirBase accession | None |
|---|
| Sequence |
40- UGACUAGAGGUUUUGCACUGUU -62
Get sequence
|
|---|
