| MirGeneDB ID | Ava-Mir-279-P24b |
|---|
| Family name |
MIR-279 (all species) |
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| Seed |
GACUAGA |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Mir-279-P21a
Ava-Mir-279-P21b
Ava-Mir-279-P22a
Ava-Mir-279-P22b
Ava-Mir-279-P23a
Ava-Mir-279-P23b
Ava-Mir-279-P24a
|
|---|
| Orthologues |
Agr-Mir-279
Asu-Mir-279-o24
Bpl-Mir-279
Eba-Mir-279
Egr-Mir-279
Esc-Mir-279
Gsa-Mir-279
Gsp-Mir-279
Hru-Mir-279
Isc-Mir-279
Lgi-Mir-279
Lhy-Mir-279
Llo-Mir-279
Mgi-Mir-279
Mom-Mir-279
Npo-Mir-279
Obi-Mir-279
Ovu-Mir-279
Pau-Mir-279
Pcr-Mir-279
Pve-Mir-279
Rph-Mir-279
Sma-Mir-279
Sne-Mir-279
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
Protostomia
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075495.1: 9643795-9643855 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
GUUGUUAUAUGUAUUGCCUAUUCAACAGUGGAGUGGAGUUUGUUGUGUCAGGUUGAUAUGUUUGAUUCCAGACUAGAUGACCUGCACUCCUCAGUUGAUAUAGUUUAUGUGUUAUAUUAAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUUGUUAUAUGUAUUGC- -| AGU G U UG GU A UUGAUAU
CUAU UCAAC GGAGUG AG U UU GUC GG \
GAUA AGUUG CCUCAC UC A AG CAG CC G
CAAUUAUAUUGUGUAUUU U^ ACU G C GU AU A UUAGUUU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Ava-Mir-279-P24b_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GAGUGGAGUUUGUUGUGUCAGG -22
Get sequence
|
|---|
| Mature sequence |
Ava-Mir-279-P24b_3p |
| mirBase accession | None |
|---|
| Sequence |
39- AGACUAGAUGACCUGCACUCCU -61
Get sequence
|
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