MirGeneDB 3.0
MirGeneDB ID

Ava-Mir-279-P23a

Family name MIR-279 (all species)
Seed GACUAGA
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues Ava-Mir-279-P21a  Ava-Mir-279-P21b  Ava-Mir-279-P22a  Ava-Mir-279-P22b  Ava-Mir-279-P23b  Ava-Mir-279-P24a  Ava-Mir-279-P24b 
Orthologues Agr-Mir-279  Asu-Mir-279-o23  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) A. vaga
Node of Origin (family) Protostomia
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)		 CP075496.1: 10905658-10905717 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGCAUGUUUAUAUUUACUGGUACACACUGAGCGCGAAUGUUCGCAGUCAAUUUGUAAAAUUCAAUUAUUGACUAGAGCACUUCGUGCUUUGGGAAAUCCGGUUUUGACGUCUAUUUACC
Get precursor sequence
Structure
        10         20        30         40        50          
UAGCAUGUUUAUAUUUA-    UACACACU         -|    GC       UUGUAAA 
                  CUGG        GAGCGCGAA UGUUC  AGUCAAU       \
                  GGCC        UUCGUGCUU ACGAG  UCAGUUA       A
CCAUUUAUCUGCAGUUUU    UAAAGGGU         C^    A-       UUAACUU 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
-   +
To To
Star sequence

Ava-Mir-279-P23a_5p*
mirBase accessionNone
Sequence 
0- AGCGCGAAUGUUCGCAGUCAAU -22
Get sequence
Mature sequence

Ava-Mir-279-P23a_3p
mirBase accessionNone
Sequence 
39- UGACUAGAGCACUUCGUGCUU -60
Get sequence