MirGeneDB 3.0

MirGeneDB ID

Asu-Mir-279-o23

Family name MIR-279 (all species)
Seed CUGGAUG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-44b
Paralogues Asu-Mir-279-o22  Asu-Mir-279-o24  Asu-Mir-279-o25  Asu-Mir-279-o26 
Orthologues Agr-Mir-279  Ava-Mir-279-P23a  Ava-Mir-279-P23b  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) A.suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)
Scaffold187: 164312-164371 [-]
Clustered miRNAs
(< 50kb from Mir-279-o23)
Mir-2-o9 Scaffold187: 163929-163989 [-]
Mir-279-o23 Scaffold187: 164312-164371 [-]
Precursor
(pre-Mir +30nt flank)
CAACUUUGCUUUGAAACGCUGCAGUAAGCUACUGGAUGUGUGUCAUAGUCAUGACGUGUGAUCAACAUGACUAGAUAUCACAUUCAGUGGUAUAUUUCAGCGCUACGCCAUUCCUGAUGA
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Structure
        10          20        30        40         50         
CAACUUUGCUUUGAAAC--    C    A             -|   A        ACGUG 
                   GCUG AGUA GCUACUGGAUGUG UGUC UAGUCAUG     U
                   CGAC UUAU UGGUGACUUACAC AUAG AUCAGUAC     G
AGUAGUCCUUACCGCAUCG    U    A             U^   -        AACUA 
.       110       100        90        80         70        60
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of nematodes and how the Caenorhabditis Mir-279s relate to Ascaris Mir-279s and thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Mature sequence

Asu-Mir-279-o23_5p

mirBase accessionMIMAT0021564
Sequence
0- ACUGGAUGUGUGUCAUAGUCAUG -23
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Star sequence

Asu-Mir-279-o23_3p*

mirBase accessionMIMAT0021565
Sequence
37- UGACUAGAUAUCACAUUCAGUGG -60
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