MirGeneDB 3.0

MirGeneDB ID

Asu-Mir-279-o22

Family name MIR-279 (all species)
Seed GACUAGA
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-44a
Paralogues Asu-Mir-279-o23  Asu-Mir-279-o24  Asu-Mir-279-o25  Asu-Mir-279-o26 
Orthologues Agr-Mir-279  Ava-Mir-279-P22a  Ava-Mir-279-P22b  Bpl-Mir-279  Eba-Mir-279  Egr-Mir-279  Esc-Mir-279  Gsa-Mir-279  Gsp-Mir-279  Hru-Mir-279  Isc-Mir-279  Lgi-Mir-279  Lhy-Mir-279  Llo-Mir-279  Mgi-Mir-279  Mom-Mir-279  Npo-Mir-279  Obi-Mir-279  Ovu-Mir-279  Pau-Mir-279  Pcr-Mir-279  Pve-Mir-279  Rph-Mir-279  Sma-Mir-279  Sne-Mir-279 
Node of Origin (locus) A.suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)
Scaffold800: 97897-97956 [-]
Clustered miRNAs
(< 50kb from Mir-279-o22)
Mir-5350-P6 Scaffold800: 97547-97610 [-]
Mir-279-o22 Scaffold800: 97897-97956 [-]
Mir-2-o10 Scaffold800: 98049-98111 [-]
Mir-36-o28 Scaffold800: 98613-98672 [-]
Precursor
(pre-Mir +30nt flank)
UCUACGUGUCGAAGACGCCCAGACGUGAAACUGGAUGUCUCUCGCAGUCAUACGGUAUAUAGAGUUCUAUGACUAGAGACACAUUCAGCUUGGCGGCUGGACGACAACCCUCACAAGUCA
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Structure
        10          20        30        40        50          
UCUACGUGUCGAAGACGC--|   A   G  A        C    GC       CGGUAUA 
                    CCAG CGU AA CUGGAUGU UCUC  AGUCAUA       \
                    GGUC GCG UU GACUUACA AGAG  UCAGUAU       U
ACUGAACACUCCCAACAGCA^   G   G  C        C    A-       CUUGAGA 
.       110       100        90        80         70
Deep sequencing
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CommentIt is not clear either from phylogenetic or syntenic information how many Mir-279 genes were present in the last common ancestor of nematodes and how the Caenorhabditis Mir-279s relate to Ascaris Mir-279s and thus these multiple paralogues are classified here as orphans pending new data.
3' NTU No
MotifsNo
Tissue expression
 +
Ce Em Em Em Em Em Em Em Em Em Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-279-o22_5p*

mirBase accessionMIMAT0021455
Sequence
0- CUGGAUGUCUCUCGCAGUCAUA -22
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Mature sequence

Asu-Mir-279-o22_3p

mirBase accessionMIMAT0021456
Sequence
39- UGACUAGAGACACAUUCAGCU -60
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