MirGeneDB 2.1

MirGeneDB ID

Asu-Mir-2-o10

Family name MIR-2 (all species)
Seed AUCACAG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-43a
Paralogues Asu-Mir-2-o6  Asu-Mir-2-o7a  Asu-Mir-2-o7b  Asu-Mir-2-o8  Asu-Mir-2-o9  Asu-Mir-2-o11a  Asu-Mir-2-o11b  Asu-Mir-2-o11c  Asu-Mir-2-o11d  Asu-Mir-2-P11 
Orthologues Tca-Mir-2-P10a  Tca-Mir-2-P10b  Tca-Mir-2-P10c 
Node of Origin (locus) A. suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)
Scaffold800: 98049-98111 [-]
Clustered miRNAs
(< 50kb from Mir-2-o10)
Mir-5350-P6 Scaffold800: 97547-97610 [-]
Mir-279-o26 Scaffold800: 97897-97956 [-]
Mir-2-o10 Scaffold800: 98049-98111 [-]
Mir-36-o28 Scaffold800: 98613-98672 [-]
Precursor
(pre-Mir +30nt flank)
AGUUUAGACGUAGUCGGAGUCGGACCCGGCGAUAGUAAGUACUGCGAUAUGCUGCAAGAACACAAACACAUAUCACAGUCUACUUGCUGUCUCCGGUUCGCUGACUGACUCAACGAAGAAAGU
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Structure
        10        20          30        40          50          
AGUUUAGACGUAGUCGGA     AC--    C          --|   C      CUGCAAGA 
                  GUCGG    CCGG GAUAGUAAGU  ACUG GAUAUG        \
                  CAGUC    GGCC CUGUCGUUCA  UGAC CUAUAC        A
UGAAAGAAGCAACUCAGU     GCUU    U          UC^   A      ACAAACAC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-2-o10_5p*

mirBase accessionMIMAT0021449
Sequence
0- GAUAGUAAGUACUGCGAUAUG -21
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Mature sequence

Asu-Mir-2-o10_3p

mirBase accessionMIMAT0021450
Sequence
40- UAUCACAGUCUACUUGCUGUCUC -63
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