MirGeneDB 2.1
MirGeneDB ID

Asu-Mir-2-o11a

Family name MIR-2 (all species)
Seed AUCACAG
Species Large roundworm (Ascaris suum)
MiRBase ID asu-mir-43b
Paralogues Asu-Mir-2-o6  Asu-Mir-2-o7a  Asu-Mir-2-o7b  Asu-Mir-2-o8  Asu-Mir-2-o9  Asu-Mir-2-o10  Asu-Mir-2-o11b  Asu-Mir-2-o11c  Asu-Mir-2-o11d  Asu-Mir-2-P11 
Orthologues Cbr-Mir-2-P11  Cel-Mir-2-P11 
Node of Origin (locus) A. suum
Node of Origin (family) Protostomia
Genome context
(ASU_PRJNA80881_plustraces)		 Scaffold1765: 14467-14524 [+]
Clustered miRNAs
(< 50kb from Mir-2-o11a)		 Mir-2-o11a Scaffold1765: 14467-14524 [+]
Mir-279-o29 Scaffold1765: 14642-14699 [+]
Mir-2-o11d Scaffold1765: 14913-14972 [+]
Precursor
(pre-Mir +30nt flank)
AAUGGGCAAAGCUCGACGCGUAUAGCGGCACGUGGCAAAGGUGCUGCGAUGCGCCGCGUUAAAUCGUAUCACAGUUCUUUGUCACCUUUUGCUUCACACGCGUAUUUUCGAUAAAACU
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Structure
        10          20        30        40        50         
AAUGGGCAAAGCUCGAC--|C  AU     CAC          U    C      CCGCG 
                   G GU  AGCGG   GUGGCAAAGG GCUG GAUGCG     \
                   C CA  UCGUU   CACUGUUUCU UGAC CUAUGC     U
UCAAAAUAGCUUUUAUGCG^A  CU     UUC          -    A      UAAAU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
0h 11 12 24 46 64 6d 7d 8d 96 Em La Ov Se Sp Te Zy
Star sequence

Asu-Mir-2-o11a_5p* (predicted)
mirBase accessionMIMAT0021451
Sequence 
0- CGUGGCAAAGGUGCUGCGAUGCG -23
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Mature sequence

Asu-Mir-2-o11a_3p
mirBase accessionMIMAT0021452
Sequence 
36- UAUCACAGUUCUUUGUCACCUU -58
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